RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 GMNCA6NCL1 334 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 NFIBO00712 420 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 FSBPO95073 299 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 CYP1A2P05177 515 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 SPP2Q13103 211 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 KRT71Q3SY84 523 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 C6orf89Q6UWU4 347 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 MAEAQ7L5Y9 396 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 FAM83AQ86UY5 434 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 C4orf19Q8IY42 314 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 SAMD3Q8N6K7 520 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 MTMR14Q8NCE2 650 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 SHC3Q92529 594 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 WNT8AQ9H1J5 351 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 TBC1D22BQ9NU19 505 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 NOVA2Q9UNW9 492 aaKnown RBP13.76□□□□□ -0.21
LINC00540-203ENST00000631321 E7EVH7 732 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 SGPL1O95470 568 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 COPB2P35606 906 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 MRPS9P82933 396 aaKnown RBP13.75□□□□□ -0.21
LINC00540-203ENST00000631321 CYP1B1Q16678 543 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 NOP9Q86U38 636 aaKnown RBP13.75□□□□□ -0.21
LINC00540-203ENST00000631321 CDAN1Q8IWY9 1227 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 ZSWIM2Q8NEG5 633 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 KAT5Q92993 513 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 CYFIP2Q96F07 1278 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 KREMEN1Q96MU8 473 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 TRIM31Q9BZY9 425 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 PABPC3Q9H361 631 aaKnown RBP13.75□□□□□ -0.21
LINC00540-203ENST00000631321 CNOT10Q9H9A5 744 aaKnown RBP13.75□□□□□ -0.21
LINC00540-203ENST00000631321 MAP3K20Q9NYL2 800 aaKnown RBP13.75□□□□□ -0.21
LINC00540-203ENST00000631321 GRHL1Q9NZI5 618 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 ATP8A1Q9Y2Q0 1164 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 COQ4Q9Y3A0 265 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 PCDHA3Q9Y5H8 950 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 ASTN2O75129 1339 aaPredicted RBP13.75□□□□□ -0.21
LINC00540-203ENST00000631321 C5orf60A6NFR6 353 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 PODXLO00592 558 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 ADRB2P07550 413 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 ASNSP08243 561 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 COMTP21964 271 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 YWHABP31946 246 aaKnown RBP13.75□□□□□ -0.21
LINC00540-203ENST00000631321 FNTAP49354 379 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 MAGOHP61326 146 aaKnown RBP13.75□□□□□ -0.21
LINC00540-203ENST00000631321 ADAT2Q7Z6V5 191 aaKnown RBP13.75□□□□□ -0.21
LINC00540-203ENST00000631321 HOOK3Q86VS8 718 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 OTUD6BQ8N6M0 293 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 KAT2BQ92831 832 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 MAGOHBQ96A72 148 aaKnown RBP13.75□□□□□ -0.21
LINC00540-203ENST00000631321 RUNDC3BQ96NL0 473 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 TMEM39BQ9GZU3 492 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 PKD2L1Q9P0L9 805 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 MYH11P35749 1972 aa13.75□□□□□ -0.21
LINC00540-203ENST00000631321 MARCKSL1P49006 195 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 PMS2P54278 862 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 FMO1Q01740 532 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 RASA3Q14644 834 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 KCTD19Q17RG1 926 aaPredicted RBP13.74□□□□□ -0.21
LINC00540-203ENST00000631321 AADACL2Q6P093 401 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 ZDHHC14Q8IZN3 488 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 OGFOD1Q8N543 542 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 PRPF38AQ8NAV1 312 aaKnown RBP13.74□□□□□ -0.21
LINC00540-203ENST00000631321 SYTL5Q8TDW5 730 aaPredicted RBP13.74□□□□□ -0.21
LINC00540-203ENST00000631321 CENPTQ96BT3 561 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 HVCN1Q96D96 273 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 C18orf8Q96DM3 657 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 PSMD1Q99460 953 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 PPANQ9NQ55 473 aaKnown RBP13.74□□□□□ -0.21
LINC00540-203ENST00000631321 BCCIPQ9P287 314 aaKnown RBP eCLIP13.74□□□□□ -0.21
LINC00540-203ENST00000631321 DCDC2CA8MYV0 355 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 BACH1O14867 736 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 SLC16A4O15374 487 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 MFAP3P55082 362 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 IFFO1Q0D2I5 559 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 MTMR1Q13613 665 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 BYSLQ13895 437 aaKnown RBP13.74□□□□□ -0.21
LINC00540-203ENST00000631321 ODF2Q5BJF6 829 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 SEL1L2Q5TEA6 688 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 ZNF746Q6NUN9 644 aaPredicted RBP13.74□□□□□ -0.21
LINC00540-203ENST00000631321 MIGA2Q7L4E1 593 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 PGM2Q96G03 612 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 LRRC4CQ9HCJ2 640 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 ANKEF1Q9NU02 776 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 PARP2Q9UGN5 583 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 CNOT7Q9UIV1 285 aaKnown RBP13.74□□□□□ -0.21
LINC00540-203ENST00000631321 GTF3C4Q9UKN8 822 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 EXOC7Q9UPT5 735 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 TRPC6Q9Y210 931 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 BCS1LQ9Y276 419 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 SNX24Q9Y343 169 aa13.74□□□□□ -0.21
LINC00540-203ENST00000631321 WDR46O15213 610 aaKnown RBP13.73□□□□□ -0.21
LINC00540-203ENST00000631321 TMOD1P28289 359 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 ADSSP30520 456 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 GPC3P51654 580 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 PEX3P56589 373 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 PSMC5P62195 406 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 DRP2Q13474 957 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 UGCGQ16739 394 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 TTC27Q6P3X3 843 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 SAMD1Q6SPF0 538 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms