RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 THAP2Q9H0W7 228 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 QTRT2Q9H974 415 aaKnown RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 DNAJC17Q9NVM6 304 aaKnown RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 GCOM1H8Y6P7 765 aaPredicted RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 LSM1O15116 133 aaKnown RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 TGFB1I1O43294 461 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 SLITRK3O94933 977 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 MYZAPP0CAP1 466 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 KCNA4P22459 653 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 SSTR3P32745 418 aaPredicted RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 HSD17B3P37058 310 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 GJA8P48165 433 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 MESDQ14696 234 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 C15orf52Q6ZUT6 534 aaKnown RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 SDCCAG8Q86SQ7 713 aaPredicted RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 ERICH1Q86X53 443 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 COL23A1Q86Y22 540 aaPredicted RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 KIF2BQ8N4N8 673 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 SLC17A8Q8NDX2 589 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 KAT5Q92993 513 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 ARHGEF26Q96DR7 871 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.5□□□□□ -0.57
CDH1-214ENST00000621016 NACA2Q9H009 215 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 PARVGQ9HBI0 331 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 SPATA7Q9P0W8 599 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 USP20Q9Y2K6 914 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 SNX24Q9Y343 169 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 IGSF9BQ9UPX0 1349 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 FOXN3O00409 490 aaPredicted RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 NDUFB5O43674 189 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 RFC5P40937 340 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 ORC2Q13416 577 aaPredicted RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 EPHA7Q15375 998 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 P3H1Q32P28 736 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 ANKRD20A8PQ5CZ79 823 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 ALS2CLQ60I27 953 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 CYFIP2Q96F07 1278 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 ARPC5LQ9BPX5 153 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 EPN3Q9H201 632 aa11.5□□□□□ -0.57
CDH1-214ENST00000621016 TAF1DQ9H5J8 278 aaPredicted RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 TYW1Q9NV66 732 aaKnown RBP11.5□□□□□ -0.57
CDH1-214ENST00000621016 SMCHD1A6NHR9 2005 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 ARHGEF35A5YM69 484 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 PHF20L1A8MW92 1017 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 K7ENM7 598 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 PSMC2P35998 433 aaKnown RBP11.49□□□□□ -0.57
CDH1-214ENST00000621016 GCLCP48506 637 aaPredicted RBP11.49□□□□□ -0.57
CDH1-214ENST00000621016 STAT2P52630 851 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 ADCY1Q08828 1119 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 EDRF1Q3B7T1 1238 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 EPC2Q52LR7 807 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 COBLL1Q53SF7 1204 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 PPP1R18Q6NYC8 613 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 CPNE8Q86YQ8 564 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 SH3GL2Q99962 352 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 KIFC3Q9BVG8 833 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 RANBP17Q9H2T7 1088 aaKnown RBP11.49□□□□□ -0.57
CDH1-214ENST00000621016 GPRC5CQ9NQ84 441 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 TCEAL9Q9UHQ7 104 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 AMFRQ9UKV5 643 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 PDXKO00764 312 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 MYCLP12524 364 aaPredicted RBP11.49□□□□□ -0.57
CDH1-214ENST00000621016 HOXA10P31260 410 aaPredicted RBP11.49□□□□□ -0.57
CDH1-214ENST00000621016 CD151P48509 253 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 TMEM179Q6ZVK1 233 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 NANOGNBQ7Z5D8 188 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 FRMD5Q7Z6J6 570 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 IQCKQ8N0W5 287 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 PPM1KQ8N3J5 372 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 CCDC63Q8NA47 563 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 WHAMMQ8TF30 809 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 EDEM3Q9BZQ6 932 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 GDF3Q9NR23 364 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 NOP53Q9NZM5 478 aaKnown RBP11.49□□□□□ -0.57
CDH1-214ENST00000621016 DLGAP2Q9P1A6 1054 aa11.49□□□□□ -0.57
CDH1-214ENST00000621016 DDX60LQ5H9U9 1706 aaKnown RBP11.49□□□□□ -0.57
CDH1-214ENST00000621016 PPP1R37O75864 691 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 MARCKSL1P49006 195 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 VPS41P49754 854 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 CLCN2P51788 898 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 PTGISQ16647 500 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 LNX1Q8TBB1 728 aaPredicted RBP11.48□□□□□ -0.57
CDH1-214ENST00000621016 TRIM11Q96F44 468 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 AGBL1Q96MI9 1066 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 POP1Q99575 1024 aaKnown RBP11.48□□□□□ -0.57
CDH1-214ENST00000621016 SELENOSQ9BQE4 189 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 APBA3O96018 575 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 POLR2MP0CAP2 368 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 ALDH1B1P30837 517 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 KCNJ1P48048 391 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 FMO5P49326 533 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 SOX10P56693 466 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 MAGOHP61326 146 aaKnown RBP11.48□□□□□ -0.57
CDH1-214ENST00000621016 HHIPL2Q6UWX4 724 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 GALNT15Q8N3T1 639 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 MAGOHBQ96A72 148 aaKnown RBP11.48□□□□□ -0.57
CDH1-214ENST00000621016 SYT15Q9BQS2 421 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 LXNQ9BS40 222 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 PLCB1Q9NQ66 1216 aa11.48□□□□□ -0.57
CDH1-214ENST00000621016 CCDC169A6NNP5 214 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms