RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SRLQ86TD4 932 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 SLC30A5Q8TAD4 765 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 SLC35G2Q8TBE7 412 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 RNF139Q8WU17 664 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 POLR3FQ9H1D9 316 aaPredicted RBP14.91□□□□□ -0.02
CPSF1-212ENST00000616140 VPS11Q9H270 941 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 FGFR1OP2Q9NVK5 253 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 ZFP69BQ9UJL9 534 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 ANGPTL2Q9UKU9 493 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 ZSCAN20P17040 1043 aaPredicted RBP14.9□□□□□ -0.02
CPSF1-212ENST00000616140 FMO5P49326 533 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 IL1RL1Q01638 556 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 EDRF1Q3B7T1 1238 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 ARL13BQ3SXY8 428 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 KRT80Q6KB66 452 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 SP8Q8IXZ3 490 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 PIP4K2CQ8TBX8 421 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 SNF8Q96H20 258 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 ADAM33Q9BZ11 813 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 L2HGDHQ9H9P8 463 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 HAUS5O94927 633 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 MDH1P40925 334 aaKnown RBP14.9□□□□□ -0.02
CPSF1-212ENST00000616140 MKRN3Q13064 507 aaKnown RBP14.9□□□□□ -0.02
CPSF1-212ENST00000616140 DSTYKQ6XUX3 929 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 RHPN2Q8IUC4 686 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 FUCA2Q9BTY2 467 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 ZNF302Q9NR11 478 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 IP6K2Q9UHH9 426 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 IREB2P48200 963 aaKnown RBP14.9□□□□□ -0.02
CPSF1-212ENST00000616140 ARPP19P56211 112 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 RWDD4Q6NW29 188 aaKnown RBP14.9□□□□□ -0.02
CPSF1-212ENST00000616140 CCT8L2Q96SF2 557 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 TUFT1Q9NNX1 390 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 TOPORSQ9NS56 1045 aaPredicted RBP14.9□□□□□ -0.02
CPSF1-212ENST00000616140 SLC12A6Q9UHW9 1150 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 GOLGA8CPA6NN73 597 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 MKRN4PQ13434 485 aaPredicted RBP14.9□□□□□ -0.02
CPSF1-212ENST00000616140 KIF22Q14807 665 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 TMTC4Q5T4D3 741 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 GPD1LQ8N335 351 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 OR2W6PQ8NHA6 318 aa14.9□□□□□ -0.02
CPSF1-212ENST00000616140 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.9□□□□□ -0.02
CPSF1-212ENST00000616140 APOBEC2Q9Y235 224 aaKnown RBP14.9□□□□□ -0.02
CPSF1-212ENST00000616140 M0QYV0 167 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 TRIM66O15016 1216 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 MEFVO15553 781 aaPredicted RBP14.89□□□□□ -0.03
CPSF1-212ENST00000616140 SPAG7O75391 227 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 ATP5HO75947 161 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 ZC3H18Q86VM9 953 aaKnown RBP14.89□□□□□ -0.03
CPSF1-212ENST00000616140 DDX42Q86XP3 938 aaKnown RBP eCLIP14.89□□□□□ -0.03
CPSF1-212ENST00000616140 ATP11CQ8NB49 1132 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 ANKS1AQ92625 1134 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 NBPF3Q9H094 633 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 BAZ2BQ9UIF8 2168 aaKnown RBP14.89□□□□□ -0.03
CPSF1-212ENST00000616140 PDS5AQ29RF7 1337 aaKnown RBP14.89□□□□□ -0.03
CPSF1-212ENST00000616140 AP5Z1O43299 807 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 RTN2O75298 545 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 MYBP10242 640 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 KITP10721 976 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 ANKRD20A4Q4UJ75 823 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 TAF1BQ53T94 588 aaPredicted RBP14.89□□□□□ -0.03
CPSF1-212ENST00000616140 ANKRD20A8PQ5CZ79 823 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 ANKRD20A2Q5SQ80 823 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 FAM102AQ5T9C2 384 aaPredicted RBP14.89□□□□□ -0.03
CPSF1-212ENST00000616140 ANKRD20A1Q5TYW2 823 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 TRIM72Q6ZMU5 477 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 FBXO33Q7Z6M2 555 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.89□□□□□ -0.031e-8■□□□□ 8.1
CPSF1-212ENST00000616140 C9orf72Q96LT7 481 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 SERPINI1Q99574 410 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 SUGT1Q9Y2Z0 365 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 SALL3Q9BXA9 1300 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 NTSR2O95665 410 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 YWHABP31946 246 aaKnown RBP14.89□□□□□ -0.03
CPSF1-212ENST00000616140 PHKA2P46019 1235 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 ARSEP51690 589 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 ESRRGP62508 458 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 NAB2Q15742 525 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 SMAD1Q15797 465 aaKnown RBP14.89□□□□□ -0.03
CPSF1-212ENST00000616140 ZC2HC1CQ53FD0 456 aaPredicted RBP14.89□□□□□ -0.03
CPSF1-212ENST00000616140 TRIM67Q6ZTA4 783 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 SLC13A1Q9BZW2 595 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 STOML1Q9UBI4 398 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 GGT7Q9UJ14 662 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 HPCAL4Q9UM19 191 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 PLAGL2Q9UPG8 496 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 OVOS2A0A0G2JMS6 1433 aa14.89□□□□□ -0.03
CPSF1-212ENST00000616140 GGPS1O95749 300 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 RXRBP28702 533 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 PMLP29590 882 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 GPC3P51654 580 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 EPHB1P54762 984 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 DUOXA2Q1HG44 320 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 ATL2Q8NHH9 583 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 KCNV2Q8TDN2 545 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 ERGIC2Q96RQ1 377 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 NCAPGQ9BPX3 1015 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 HSPBP1Q9NZL4 362 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 ARFIP2P53365 341 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 MDM2Q00987 491 aaPredicted RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms