RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 AP5M1Q9H0R1 490 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 SAYSD1Q9NPB0 183 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 TISP43B9A030 160 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 GGPS1O95749 300 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 LDHAP00338 332 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 ADORA2BP29275 332 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 FUT2Q10981 343 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 CCDC38Q502W7 563 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 SH3RF1Q7Z6J0 888 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 RNF10Q8N5U6 811 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 PPM1EQ8WY54 764 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 GMCL1Q96IK5 515 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 AGO4Q9HCK5 861 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 UBE4BO95155 1302 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 PI4K2BG5E9Z4 385 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 RTN2O75298 545 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 PGK2P07205 417 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 SLC12A3P55017 1021 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 MRPS9P82933 396 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 TRIM65Q6PJ69 517 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 CCDC137Q6PK04 289 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 FAM149B1Q96BN6 582 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 MTMR9Q96QG7 549 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 CBWD1Q9BRT8 395 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 SLC38A10Q9HBR0 1119 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 SUCLA2Q9P2R7 463 aaPredicted RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 GAKO14976 1311 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 SYNGAP1Q96PV0 1343 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 VGLL3A8MV65 326 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 PPP1R11O60927 126 aaPredicted RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 PRKCBP05771 671 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 STAT5BP51692 787 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 ARPP19P56211 112 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 MAGOHP61326 146 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 GKAP1Q5VSY0 366 aaPredicted RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 EXOC4Q96A65 974 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 RPS6KC1Q96S38 1066 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 MRPL4Q9BYD3 311 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 MCF2LO15068 1137 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 ARHGAP25P42331 645 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 ATP11AP98196 1134 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 KCNA1Q09470 495 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 MYO1EQ12965 1108 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 SPDYE2Q495Y8 402 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 GLE1Q53GS7 698 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 EMBQ6PCB8 327 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 ANKS1AQ92625 1134 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 ARHGEF2Q92974 986 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 LACRTQ9GZZ8 138 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 ARHGAP20Q9P2F6 1191 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 TMX2Q9Y320 296 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 NUP188Q5SRE5 1749 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 I3L4J1 428 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 PRPSAP2O60256 369 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 MMEP08473 750 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 CASP5P51878 434 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 NEDD9Q14511 834 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 ZNF667Q5HYK9 610 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 SPOUT1Q5T280 376 aaKnown RBP9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 TRAPPC11Q7Z392 1133 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 CCNYQ8ND76 341 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 SLC20A1Q8WUM9 679 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 P3H4Q92791 437 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 NACA2Q9H009 215 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 MIS12Q9H081 205 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 TAF1DQ9H5J8 278 aaPredicted RBP9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 PXMP2Q9NR77 195 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 RASGRF2O14827 1237 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 AKAP3O75969 853 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 TXNP10599 105 aaKnown RBP9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 GUCY1A3Q02108 690 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 GABPAQ06546 454 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 CXCL9Q07325 125 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 EDRF1Q3B7T1 1238 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 SCYL3Q8IZE3 742 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 TNFRSF25Q93038 417 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 SMC6Q96SB8 1091 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 TMEM117Q9H0C3 514 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 GINM1Q9NU53 330 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 TBX20Q9UMR3 447 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 ALS2Q96Q42 1657 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 STAMBPO95630 424 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 KRT17Q04695 432 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 TTLL4Q14679 1199 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 CATSPER4Q7RTX7 472 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 A0A087X0T9 212 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 CALCAP01258 141 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 FAM228BP0C875 321 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 LRRC14Q15048 493 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 CYP4A22Q5TCH4 519 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 CBWD2Q8IUF1 395 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 AGBL3Q8NEM8 1001 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 PSPC1Q8WXF1 523 aaKnown RBP9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 TBC1D31Q96DN5 1066 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 CCDC97Q96F63 343 aaPredicted RBP9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 PITPNM2Q9BZ72 1349 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 TARSL2A2RTX5 802 aaKnown RBP9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 VIL1P09327 827 aaKnown RBP9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 SEMA3FQ13275 785 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 PPP6R3Q5H9R7 873 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms