RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PRMT1Q99873 361 aaKnown RBP10.95□□□□□ -0.66
VPS39-214ENST00000614932 MTFR1LQ9H019 292 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 LRMDAQ9H2I8 198 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 CD209Q9NNX6 404 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 FBXL5Q9UKA1 691 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 RPL26L1Q9UNX3 145 aaKnown RBP10.95□□□□□ -0.66
VPS39-214ENST00000614932 USP20Q9Y2K6 914 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 SPTLC1O15269 473 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 ATP5HO75947 161 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 PDE5AO76074 875 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 AFPP02771 609 aaKnown RBP10.95□□□□□ -0.66
VPS39-214ENST00000614932 POTEIP0CG38 1075 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 CYP4A11Q02928 519 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 DCTN2Q13561 401 aaKnown RBP10.95□□□□□ -0.66
VPS39-214ENST00000614932 DOK7Q18PE1 504 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 EAPPQ56P03 285 aaPredicted RBP10.95□□□□□ -0.66
VPS39-214ENST00000614932 MFSD14BQ5SR56 506 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 CLEC10AQ8IUN9 316 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 SMYD4Q8IYR2 804 aaPredicted RBP10.95□□□□□ -0.66
VPS39-214ENST00000614932 TTC8Q8TAM2 541 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 EURLQ9NYK6 297 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 ARPP21Q9UBL0 812 aaPredicted RBP10.95□□□□□ -0.66
VPS39-214ENST00000614932 DUOX1Q9NRD9 1551 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 EMP3P54852 163 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 GTF2IP78347 998 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 KIF22Q14807 665 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 MEA1Q16626 185 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 TREML1Q86YW5 311 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 SLC43A3Q8NBI5 491 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 PPFIBP2Q8ND30 876 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 PNMA1Q8ND90 353 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 TMEM237Q96Q45 408 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 PHF20Q9BVI0 1012 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 MRPL46Q9H2W6 279 aaKnown RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 TIMMDC1Q9NPL8 285 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 GGA1Q9UJY5 639 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 TDRKHQ9Y2W6 561 aaKnown RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 CNTNAP5Q8WYK1 1306 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 IRS2Q9Y4H2 1338 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 CCDC162PA2VCL2 907 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 POTEFA5A3E0 1075 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 TRIM75PA6NK02 468 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 PTPREP23469 700 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 RGS2P41220 211 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 TXKP42681 527 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 ACADVLP49748 655 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 SPAG1Q07617 926 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 SPIDRQ14159 915 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 C12orf60Q5U649 245 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 LRRC8BQ6P9F7 803 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 TRIM67Q6ZTA4 783 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 TTC30AQ86WT1 665 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 ST13P4Q8IZP2 240 aaPredicted RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 ZNF444Q8N0Y2 327 aaPredicted RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 SPATA20Q8TB22 786 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 MS4A14Q96JA4 679 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 DNAJC1Q96KC8 554 aaKnown RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 PLIN2Q99541 437 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 CCT7Q99832 543 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 ASCC2Q9H1I8 757 aaPredicted RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 NHEJ1Q9H9Q4 299 aaPredicted RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 TRPC5Q9UL62 973 aaPredicted RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 CAPN11Q9UMQ6 739 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 PASKQ96RG2 1323 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 SCN7AQ01118 1682 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 TIAM2Q8IVF5 1701 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 SMIM31A0A1B0GVY4 71 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 MGEA5O60502 916 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 MOCS3O95396 460 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 HSPA8P11142 646 aaKnown RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 CD44P16070 742 aaKnown RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 ECHS1P30084 290 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 ARFIP2P53365 341 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 EIF3BP55884 814 aaKnown RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 TBL3Q12788 808 aaKnown RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 ADRM1Q16186 407 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 ZCWPW2Q504Y3 356 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 SLC7A5P1Q8MH63 180 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 FAM133AQ8N9E0 248 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 TBC1D16Q8TBP0 767 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 FNDC8Q8TC99 324 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 SYMPKQ92797 1274 aaKnown RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 NMD3Q96D46 503 aaKnown RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 DHX36Q9H2U1 1008 aaKnown RBP10.94□□□□□ -0.66
VPS39-214ENST00000614932 ADAM7Q9H2U9 754 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 ATAD3AQ9NVI7 634 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 STK32BQ9NY57 414 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 TAB2Q9NYJ8 693 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 NDUFA13Q9P0J0 144 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 LRWD1Q9UFC0 647 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 SPATA31A6Q5VVP1 1343 aa10.94□□□□□ -0.66
VPS39-214ENST00000614932 LCA5LO95447 670 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 MYBP10242 640 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 CDK4P11802 303 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 ENDOUP21128 410 aaKnown RBP10.93□□□□□ -0.66
VPS39-214ENST00000614932 SCNN1DP51172 638 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 CYP27A1Q02318 531 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 UBXN1Q04323 297 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 PTGDRQ13258 359 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 ITGA9Q13797 1035 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms