RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TAP1Q03518 808 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 STRN3Q13033 797 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 TMEM132AQ24JP5 1023 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 HERC4Q5GLZ8 1057 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 ATF7IP2Q5U623 682 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 PPP2R2DQ66LE6 453 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 ZNF720Q7Z2F6 126 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 CCDC65Q8IXS2 484 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 FMR1NBQ8N0W7 255 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 SMG8Q8ND04 991 aaKnown RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 SLC17A8Q8NDX2 589 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 LPPQ93052 612 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 ACO2Q99798 780 aaKnown RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 MRPL4Q9BYD3 311 aaKnown RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 ST6GALNAC4Q9H4F1 302 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 ZNF576Q9H609 170 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 OLFML3Q9NRN5 406 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 IPPQ9Y573 584 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 CHD9Q3L8U1 2897 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 LINC01553A4QN01 128 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 MEIS3P2A8K0S8 358 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 HOXA2O43364 376 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 NPTXRO95502 500 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 GTF2BQ00403 316 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 COASYQ13057 564 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 SNW1Q13573 536 aaKnown RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 CUL4BQ13620 913 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 BTG3Q14201 252 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 ZC2HC1CQ53FD0 456 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 CLLU1OSQ5K130 101 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 ZNF697Q5TEC3 545 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 EEF1DP3Q658K8 133 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 KRBA2Q6ZNG9 492 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 CLEC17AQ6ZS10 378 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 CMTR2Q8IYT2 770 aaKnown RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 CNNM3Q8NE01 707 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 ENGASEQ8NFI3 743 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 PGBD4Q96DM1 585 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 TARS2Q9BW92 718 aaKnown RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 TRIM6Q9C030 488 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 MRPL44Q9H9J2 332 aaKnown RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 TBC1D7Q9P0N9 293 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 TBX20Q9UMR3 447 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 TNFSF13BQ9Y275 285 aa18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 FNDC1Q4ZHG4 1894 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-202ENST00000611852 GADD45BO75293 160 aaPredicted RBP18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 ABCD1P33897 745 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 FAM160A1Q05DH4 1040 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 AGMOQ6ZNB7 445 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 SPRED2Q7Z698 418 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 FIBCD1Q8N539 461 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 CASD1Q96PB1 797 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 ADPGKQ9BRR6 497 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 STRA6Q9BX79 667 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 RNF39Q9H2S5 420 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 SEMA6BQ9H3T3 888 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 NXF3Q9H4D5 531 aaKnown RBP18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 PTPRHQ9HD43 1115 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 HES2Q9Y543 173 aa18.17■□□□□ 0.5
CCDC28A-202ENST00000611852 TBKBP1A7MCY6 615 aa18.16■□□□□ 0.5
CCDC28A-202ENST00000611852 PPP1R37O75864 691 aa18.16■□□□□ 0.5
CCDC28A-202ENST00000611852 PAN2Q504Q3 1202 aaKnown RBP18.16■□□□□ 0.5
CCDC28A-202ENST00000611852 ZPBP2Q6X784 338 aa18.16■□□□□ 0.5
CCDC28A-202ENST00000611852 UNC13DQ70J99 1090 aa18.16■□□□□ 0.5
CCDC28A-202ENST00000611852 Q7L0L9 218 aa18.16■□□□□ 0.5
CCDC28A-202ENST00000611852 ABI1Q8IZP0 508 aa18.16■□□□□ 0.5
CCDC28A-202ENST00000611852 HELQQ8TDG4 1101 aa18.16■□□□□ 0.5
CCDC28A-202ENST00000611852 TMEM117Q9H0C3 514 aa18.16■□□□□ 0.5
CCDC28A-202ENST00000611852 PVALEFA0A1B0GWK0 134 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 ABLIM1O14639 778 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 GTPBP6O43824 516 aaPredicted RBP18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 TOM1L1O75674 476 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 MYL1P05976 194 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 LINC00271P0C7V0 271 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 ITGA4P13612 1032 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 PROZP22891 400 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 CASP5P51878 434 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 EHHADHQ08426 723 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 MAP4K3Q8IVH8 894 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 HPS3Q969F9 1004 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 FGFBP2Q9BYJ0 223 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 CDH23Q9H251 3354 aa18.15■□□□□ 0.5
CCDC28A-202ENST00000611852 OFD1O75665 1012 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 GCNT3O95395 438 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 PIGRP01833 764 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 ERVK-21P61565 698 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 DCAF4L1Q3SXM0 396 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 ZNF568Q3ZCX4 644 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 MPZL3Q6UWV2 235 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 HACE1Q8IYU2 909 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 DEFB123Q8N688 67 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 CLP1Q92989 425 aaKnown RBP18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 HVCN1Q96D96 273 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 BICD1Q96G01 975 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 ZBTB45Q96K62 511 aaPredicted RBP18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 FAM161BQ96MY7 647 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 TGS1Q96RS0 853 aaKnown RBP18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 CDT1Q9H211 546 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 CERS4Q9HA82 394 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 RSAD1Q9HA92 442 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms