RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 NECAB2Q7Z6G3 386 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 NLRP10Q86W26 655 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 ARRDC4Q8NCT1 418 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 RASGRP4Q8TDF6 673 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 SREK1Q8WXA9 508 aaKnown RBP5.76□□□□□ -1.49
LINC00540-201ENST00000611481 PPP1R14AQ96A00 147 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 GPRASP2Q96D09 838 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 ZNF496Q96IT1 587 aaPredicted RBP5.76□□□□□ -1.49
LINC00540-201ENST00000611481 CLMNQ96JQ2 1002 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 MRGPRX3Q96LB0 322 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 THEGQ9P2T0 379 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 ZDHHC9Q9Y397 364 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 RIPOR2Q9Y4F9 1068 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 SSC5DA1L4H1 1573 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 TCRBV5S2A0A599 114 aa5.75□□□□□ -1.49
LINC00540-201ENST00000611481 CYP4F3Q08477 520 aa5.75□□□□□ -1.49
LINC00540-201ENST00000611481 EIF4A2Q14240 407 aaKnown RBP5.75□□□□□ -1.49
LINC00540-201ENST00000611481 HS1BP3Q53T59 392 aa5.75□□□□□ -1.49
LINC00540-201ENST00000611481 TTC5Q8N0Z6 440 aa5.75□□□□□ -1.49
LINC00540-201ENST00000611481 Q8TCH9 128 aa5.75□□□□□ -1.49
LINC00540-201ENST00000611481 SHDQ96IW2 340 aa5.75□□□□□ -1.49
LINC00540-201ENST00000611481 DEFB118Q96PH6 123 aa5.75□□□□□ -1.49
LINC00540-201ENST00000611481 ZNF341Q9BYN7 854 aa5.75□□□□□ -1.49
LINC00540-201ENST00000611481 MEGF9Q9H1U4 602 aa5.75□□□□□ -1.49
LINC00540-201ENST00000611481 RTL9Q8NET4 1388 aa5.75□□□□□ -1.49
LINC00540-201ENST00000611481 TCF20Q9UGU0 1960 aaKnown RBP5.75□□□□□ -1.49
LINC00540-201ENST00000611481 FAM205AQ6ZU69 1335 aa5.74□□□□□ -1.49
LINC00540-201ENST00000611481 H7BY64 318 aa5.74□□□□□ -1.49
LINC00540-201ENST00000611481 MEFVO15553 781 aaPredicted RBP5.74□□□□□ -1.49
LINC00540-201ENST00000611481 ECE2O60344 883 aa5.74□□□□□ -1.49
LINC00540-201ENST00000611481 TADA3O75528 432 aa5.74□□□□□ -1.49
LINC00540-201ENST00000611481 LRG1P02750 347 aa5.74□□□□□ -1.49
LINC00540-201ENST00000611481 HOXC12P31275 282 aa5.74□□□□□ -1.49
LINC00540-201ENST00000611481 NCAPHQ15003 741 aa5.74□□□□□ -1.49
LINC00540-201ENST00000611481 EMC4Q5J8M3 183 aa5.74□□□□□ -1.49
LINC00540-201ENST00000611481 CCDC103Q8IW40 242 aa5.74□□□□□ -1.49
LINC00540-201ENST00000611481 CPLX3Q8WVH0 158 aa5.74□□□□□ -1.49
LINC00540-201ENST00000611481 TMEFF2Q9UIK5 374 aaPredicted RBP5.74□□□□□ -1.49
LINC00540-201ENST00000611481 ING1Q9UK53 422 aaPredicted RBP5.74□□□□□ -1.49
LINC00540-201ENST00000611481 ADAM29Q9UKF5 820 aa5.74□□□□□ -1.49
LINC00540-201ENST00000611481 ROCK2O75116 1388 aaKnown RBP5.74□□□□□ -1.49
LINC00540-201ENST00000611481 SMIM22K7EJ46 135 aa5.73□□□□□ -1.49
LINC00540-201ENST00000611481 RNMTO43148 476 aaKnown RBP5.73□□□□□ -1.49
LINC00540-201ENST00000611481 VAMP1P23763 118 aa5.73□□□□□ -1.49
LINC00540-201ENST00000611481 CTGFP29279 349 aa5.73□□□□□ -1.49
LINC00540-201ENST00000611481 ZNF280AP59817 542 aaPredicted RBP5.73□□□□□ -1.49
LINC00540-201ENST00000611481 LSAMPQ13449 338 aa5.73□□□□□ -1.49
LINC00540-201ENST00000611481 TMC5Q6UXY8 1006 aa5.73□□□□□ -1.49
LINC00540-201ENST00000611481 TEX13AQ9BXU3 409 aaPredicted RBP5.73□□□□□ -1.49
LINC00540-201ENST00000611481 NYXQ9GZU5 481 aa5.73□□□□□ -1.49
LINC00540-201ENST00000611481 SEC61A2Q9H9S3 476 aa5.73□□□□□ -1.49
LINC00540-201ENST00000611481 MYOZ2Q9NPC6 264 aa5.73□□□□□ -1.49
LINC00540-201ENST00000611481 ABCC4O15439 1325 aa5.73□□□□□ -1.49
LINC00540-201ENST00000611481 MYPNQ86TC9 1320 aa5.73□□□□□ -1.49
LINC00540-201ENST00000611481 CHD8Q9HCK8 2581 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 HEG1Q9ULI3 1381 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 ARNTLO00327 626 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 DGKIO75912 1065 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 SNRPB2P08579 225 aaKnown RBP5.72□□□□□ -1.49
LINC00540-201ENST00000611481 VIL1P09327 827 aaKnown RBP5.72□□□□□ -1.49
LINC00540-201ENST00000611481 HOXD10P28358 340 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 ECI1P42126 302 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 PSMC4P43686 418 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 NASPP49321 788 aaPredicted RBP5.72□□□□□ -1.49
LINC00540-201ENST00000611481 TESK1Q15569 626 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 HLFQ16534 295 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 ACBD5Q5T8D3 534 aaPredicted RBP5.72□□□□□ -1.49
LINC00540-201ENST00000611481 RCBTB1Q8NDN9 531 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 PHOSPHO1Q8TCT1 267 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 BTN2A2Q8WVV5 523 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 BRI3BPQ8WY22 251 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 CHAMP1Q96JM3 812 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 LGR4Q9BXB1 951 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 HSPBP1Q9NZL4 362 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 MYOTQ9UBF9 498 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 FBXL7Q9UJT9 491 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 UBR2Q8IWV8 1755 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 DUOX1Q9NRD9 1551 aa5.72□□□□□ -1.49
LINC00540-201ENST00000611481 LAMB1P07942 1786 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 CCL15-CCL14A0A0B4J2E2 113 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 NPIPB8E9PQR5 432 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 MAFKO60675 156 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 WDHD1O75717 1129 aaPredicted RBP5.71□□□□□ -1.5
LINC00540-201ENST00000611481 CPP00450 1065 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 SCG5P05408 212 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 CAPN2P17655 700 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 NCLP19338 710 aaKnown RBP5.71□□□□□ -1.5
LINC00540-201ENST00000611481 LTBRP36941 435 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 FHL2Q14192 279 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 PRKD1Q15139 912 aaPredicted RBP5.71□□□□□ -1.5
LINC00540-201ENST00000611481 CCL15Q16663 113 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 RALYLQ86SE5 291 aaKnown RBP5.71□□□□□ -1.5
LINC00540-201ENST00000611481 FAM43AQ8N2R8 423 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 NUDT10Q8NFP7 164 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.71□□□□□ -1.5
LINC00540-201ENST00000611481 UBXN4Q92575 508 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 NUDT11Q96G61 164 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 CCDC140Q96MF4 163 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 UIMC1Q96RL1 719 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 LBHD1Q9BQE6 289 aaPredicted RBP5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms