RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 STK24Q9Y6E0 443 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 E9PMD0 336 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 FSCN2O14926 492 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 PER2O15055 1255 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 SLC26A4O43511 780 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 RPA1P27694 616 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 TMOD1P28289 359 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 MRE11P49959 708 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 CLCN3P51790 818 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 ERVFC1P60507 584 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 PLCB3Q01970 1234 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 DHX8Q14562 1220 aaKnown RBP14.02□□□□□ -0.17
UPF1-208ENST00000600012 MCM6Q14566 821 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 KANK3Q6NY19 840 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 LRSAM1Q6UWE0 723 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 TRIM67Q6ZTA4 783 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 TRMT1LQ7Z2T5 733 aaKnown RBP14.02□□□□□ -0.17
UPF1-208ENST00000600012 ELOA2Q8IYF1 753 aaPredicted RBP14.02□□□□□ -0.17
UPF1-208ENST00000600012 LRRC43Q8N309 656 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 RAD54LQ92698 747 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 FUCA2Q9BTY2 467 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 POLR3CQ9BUI4 534 aaPredicted RBP14.02□□□□□ -0.17
UPF1-208ENST00000600012 NT5C3AQ9H0P0 336 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 BLZF1Q9H2G9 400 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 CUEDC2Q9H467 287 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 TUFT1Q9NNX1 390 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 KIAA1468Q9P260 1216 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 STK17AQ9UEE5 414 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 HOOK1Q9UJC3 728 aaKnown RBP14.02□□□□□ -0.17
UPF1-208ENST00000600012 AKT3Q9Y243 479 aa14.02□□□□□ -0.17
UPF1-208ENST00000600012 TMEM221A6NGB7 291 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 WDR64B1ANS9 1081 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 M0R296 226 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 BIN1O00499 593 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 SLITRK3O94933 977 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 ZSCAN20P17040 1043 aaPredicted RBP14.01□□□□□ -0.17
UPF1-208ENST00000600012 PPM1AP35813 382 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 JAK3P52333 1124 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 NLRP11P59045 1033 aaKnown RBP14.01□□□□□ -0.17
UPF1-208ENST00000600012 ZXDAP98168 799 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 RBM10P98175 930 aaKnown RBP14.01□□□□□ -0.17
UPF1-208ENST00000600012 TYRO3Q06418 890 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 EFCAB12Q6NXP0 572 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 SASS6Q6UVJ0 657 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 TMEM184AQ6ZMB5 413 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 GAS2L3Q86XJ1 694 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 TPH2Q8IWU9 490 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 ABI1Q8IZP0 508 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 LINC01465Q8N7H1 131 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 VN1R2Q8NFZ6 395 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 SUSD6Q92537 303 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 LARP4BQ92615 738 aaKnown RBP14.01□□□□□ -0.17
UPF1-208ENST00000600012 CCDC34Q96HJ3 373 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 ZNF558Q96NG5 402 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 HSD17B14Q9BPX1 270 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 LXNQ9BS40 222 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 ADAMTS10Q9H324 1103 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 MAGEF1Q9HAY2 307 aa14.01□□□□□ -0.17
UPF1-208ENST00000600012 WRAP73Q9P2S5 460 aaPredicted RBP14.01□□□□□ -0.17
UPF1-208ENST00000600012 TRIOO75962 3097 aa14□□□□□ -0.17
UPF1-208ENST00000600012 KMT2EQ8IZD2 1858 aa14□□□□□ -0.17
UPF1-208ENST00000600012 OATP04181 439 aa14□□□□□ -0.17
UPF1-208ENST00000600012 SSBP05455 408 aaKnown RBP eCLIP14□□□□□ -0.17
UPF1-208ENST00000600012 EIF4BP23588 611 aaKnown RBP14□□□□□ -0.17
UPF1-208ENST00000600012 DPYDQ12882 1025 aa14□□□□□ -0.17
UPF1-208ENST00000600012 CUL4BQ13620 913 aa14□□□□□ -0.17
UPF1-208ENST00000600012 KCNC3Q14003 757 aa14□□□□□ -0.17
UPF1-208ENST00000600012 UGCGQ16739 394 aa14□□□□□ -0.17
UPF1-208ENST00000600012 PLPP4Q5VZY2 271 aa14□□□□□ -0.17
UPF1-208ENST00000600012 KCNT2Q6UVM3 1135 aa14□□□□□ -0.17
UPF1-208ENST00000600012 ECHDC2Q86YB7 292 aa14□□□□□ -0.17
UPF1-208ENST00000600012 LRRC71Q8N4P6 559 aa14□□□□□ -0.17
UPF1-208ENST00000600012 PBXIP1Q96AQ6 731 aa14□□□□□ -0.17
UPF1-208ENST00000600012 RPGRIP1Q96KN7 1286 aa14□□□□□ -0.17
UPF1-208ENST00000600012 CASD1Q96PB1 797 aa14□□□□□ -0.17
UPF1-208ENST00000600012 TCF25Q9BQ70 676 aa14□□□□□ -0.17
UPF1-208ENST00000600012 TSPY26PQ9H489 355 aa14□□□□□ -0.17
UPF1-208ENST00000600012 NGRNQ9NPE2 291 aaKnown RBP14□□□□□ -0.17
UPF1-208ENST00000600012 ENTPD7Q9NQZ7 604 aa14□□□□□ -0.17
UPF1-208ENST00000600012 NRBP2Q9NSY0 501 aa14□□□□□ -0.17
UPF1-208ENST00000600012 RNF19AQ9NV58 838 aa14□□□□□ -0.17
UPF1-208ENST00000600012 KBTBD4Q9NVX7 518 aa14□□□□□ -0.17
UPF1-208ENST00000600012 PCDHA5Q9Y5H7 936 aa14□□□□□ -0.17
UPF1-208ENST00000600012 ZNF862O60290 1169 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 P4HBP07237 508 aaKnown RBP13.99□□□□□ -0.17
UPF1-208ENST00000600012 PLA2G4BP0C869 781 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 CCDC192P0DO97 292 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 SFNP31947 248 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 GPC3P51654 580 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 PRKCEQ02156 737 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 KRT17Q04695 432 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 ISM2Q6H9L7 571 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 ANKRD54Q6NXT1 300 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 LRRC55Q6ZSA7 311 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 SV2BQ7L1I2 683 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 SUGP1Q8IWZ8 645 aaKnown RBP13.99□□□□□ -0.17
UPF1-208ENST00000600012 RDM1Q8NG50 284 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 PIGOQ8TEQ8 1089 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 SMARCE1Q969G3 411 aa13.99□□□□□ -0.17
UPF1-208ENST00000600012 SCLT1Q96NL6 688 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms