RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PROZP22891 400 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 LONRF3Q496Y0 759 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 CNNM4Q6P4Q7 775 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 SLC27A1Q6PCB7 646 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 DYMQ7RTS9 669 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 TMEM192Q8IY95 271 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 HELQQ8TDG4 1101 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 STAMQ92783 540 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 DHX58Q96C10 678 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 ACO2Q99798 780 aaKnown RBP21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 STRA6Q9BX79 667 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 TNMDQ9H2S6 317 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 GOLPH3LQ9H4A5 285 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 NXF3Q9H4D5 531 aaKnown RBP21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 PARVGQ9HBI0 331 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 TYW1Q9NV66 732 aaKnown RBP21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 RBM19Q9Y4C8 960 aaKnown RBP21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 TRIP11Q15643 1979 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 A0A1B0GVL5 298 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 K7ERI5 159 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 ACTN4O43707 911 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 B4GALT3O60512 393 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 PPP1R37O75864 691 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 POU3F3P20264 500 aaPredicted RBP21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 BMPR1AP36894 532 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 RNF169Q8NCN4 708 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 GSTCDQ8NEC7 633 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 GDPD5Q8WTR4 605 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 FGFBP2Q9BYJ0 223 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 HAPLN2Q9GZV7 340 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 CUEDC2Q9H467 287 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 RNF216Q9NWF9 866 aaPredicted RBP21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 LARSQ9P2J5 1176 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 MTUS1Q9ULD2 1270 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 KCNH3Q9ULD8 1083 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 TNFSF13BQ9Y275 285 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 A0A0C4DFX4 3053 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 MYO7AQ13402 2215 aa21.47■■□□□ 1.03
SHKBP1-221ENST00000599833 A0A1W2PQ27 194 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 A0A1W2PQ64 194 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 A0A1W2PQD8 194 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 HOXA2O43364 376 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 NPTXRO95502 500 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 HAUS6Q7Z4H7 955 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 IQUBQ8NA54 791 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 SAMD11Q96NU1 681 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 TARS2Q9BW92 718 aaKnown RBP21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 TRIM9Q9C026 710 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 CXCL16Q9H2A7 254 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 ST6GALNAC4Q9H4F1 302 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 TSHZ2Q9NRE2 1034 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 STXBP5LQ9Y2K9 1186 aa21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 TDRD15B5MCY1 1934 aaKnown RBP21.46■■□□□ 1.03
SHKBP1-221ENST00000599833 H3BNC9 293 aa21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 N4BP3O15049 544 aa21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 TRAK2O60296 914 aa21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 FAM13AO94988 1023 aa21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 LIG1P18858 919 aa21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 NMT1P30419 496 aaKnown RBP21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 ANP32AP39687 249 aaKnown RBP21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 GTF2BQ00403 316 aa21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 ATF7IP2Q5U623 682 aa21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 SFR1Q86XK3 245 aa21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 MYCT1Q8N699 235 aa21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 FAM13BQ9NYF5 915 aa21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 VCANP13611 3396 aa21.45■■□□□ 1.02
SHKBP1-221ENST00000599833 MEFVO15553 781 aaPredicted RBP21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 PIGRP01833 764 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 CASP1P29466 404 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 NDUFA8P51970 172 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 EHHADHQ08426 723 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 CAMK1Q14012 370 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 CNNM3Q8NE01 707 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 FBXO22Q8NEZ5 403 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 PGBD4Q96DM1 585 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 C7orf25Q9BPX7 421 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 CDT1Q9H211 546 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 RSAD1Q9HA92 442 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 TBC1D13Q9NVG8 400 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 MIOSQ9NXC5 875 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 SERTAD1Q9UHV2 236 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 KCNG1Q9UIX4 513 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 MTCH2Q9Y6C9 303 aa21.44■■□□□ 1.02
SHKBP1-221ENST00000599833 TBCAO75347 108 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 KRT18P05783 430 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 CTNNB1P35222 781 aa21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 CASP5P51878 434 aa21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 SMTNP53814 917 aa21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 NCBP1Q09161 790 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 ZC2HC1CQ53FD0 456 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 SLC39A4Q6P5W5 647 aa21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 ZNF720Q7Z2F6 126 aa21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 LRRC43Q8N309 656 aa21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 CEP120Q8N960 986 aa21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 COLGALT1Q8NBJ5 622 aa21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 ZBTB45Q96K62 511 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 ZFP42Q96MM3 310 aa21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 MRPL4Q9BYD3 311 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 IKZF4Q9H2S9 585 aa21.43■■□□□ 1.02
SHKBP1-221ENST00000599833 MAGEF1Q9HAY2 307 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms