RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 F8W810 466 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 MBTPS2O43462 519 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 POMCP01189 267 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 MLH1P40692 756 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 DSC1Q08554 894 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 RESTQ13127 1097 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 TMEM119Q4V9L6 283 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 KRT79Q5XKE5 535 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 EEF1DP3Q658K8 133 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 ARL6IP4Q66PJ3 421 aaKnown RBP13.44□□□□□ -0.26
LIG1-217ENST00000599165 RINT1Q6NUQ1 792 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 EP400NLQ6ZTU2 488 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 TAS1R3Q7RTX0 852 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 ZBP1Q9H171 429 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 TLE6Q9H808 572 aa13.44□□□□□ -0.26
LIG1-217ENST00000599165 C2orf71A6NGG8 1288 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 ARL5CA6NH57 179 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 NPTXRO95502 500 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 ITGA4P13612 1032 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 SYT1P21579 422 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 AKAP5P24588 427 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 ALDH7A1P49419 539 aaKnown RBP13.43□□□□□ -0.26
LIG1-217ENST00000599165 PLXNA3P51805 1871 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 ZP2Q05996 745 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 COASYQ13057 564 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 PTPAQ15257 358 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 SMAD2Q15796 467 aaKnown RBP13.43□□□□□ -0.26
LIG1-217ENST00000599165 NT5DC1Q5TFE4 455 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 PDE12Q6L8Q7 609 aaKnown RBP13.43□□□□□ -0.26
LIG1-217ENST00000599165 FAM173BQ6P4H8 233 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 SLC27A1Q6PCB7 646 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 TMEM184AQ6ZMB5 413 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 COLGALT2Q8IYK4 626 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 RNF168Q8IYW5 571 aaPredicted RBP13.43□□□□□ -0.26
LIG1-217ENST00000599165 MRPL43Q8N983 215 aaKnown RBP13.43□□□□□ -0.26
LIG1-217ENST00000599165 SMRP1Q8NCR6 262 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 CNNM3Q8NE01 707 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 FEZF2Q8TBJ5 459 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 MICAL1Q8TDZ2 1067 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 AUTS2Q8WXX7 1259 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 PRIMPOLQ96LW4 560 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 PLIN2Q99541 437 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 RAB34Q9BZG1 259 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 GBP3Q9H0R5 595 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 PRMT7Q9NVM4 692 aaPredicted RBP13.43□□□□□ -0.26
LIG1-217ENST00000599165 GTF3C3Q9Y5Q9 886 aa13.43□□□□□ -0.26
LIG1-217ENST00000599165 C19orf67A6NJJ6 358 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 ACKR2O00590 384 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 HIP1RO75146 1068 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 PRKCBP05771 671 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 NPTX2P47972 431 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 NDUFV1P49821 464 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 SCNN1GP51170 649 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 SLC12A3P55017 1021 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 SMAD4Q13485 552 aaKnown RBP13.42□□□□□ -0.26
LIG1-217ENST00000599165 SF3A1Q15459 793 aaKnown RBP13.42□□□□□ -0.26
LIG1-217ENST00000599165 BRAPQ7Z569 592 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 DDX53Q86TM3 631 aaKnown RBP13.42□□□□□ -0.26
LIG1-217ENST00000599165 VPS52Q8N1B4 723 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 KIFAP3Q92845 792 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 INTS4Q96HW7 963 aaKnown RBP13.42□□□□□ -0.26
LIG1-217ENST00000599165 TMEM175Q9BSA9 504 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 APOL6Q9BWW8 343 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 C2orf40Q9H1Z8 148 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 NGRNQ9NPE2 291 aaKnown RBP13.42□□□□□ -0.26
LIG1-217ENST00000599165 ENTPD7Q9NQZ7 604 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 BLOC1S4Q9NUP1 217 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 ARHGAP28Q9P2N2 729 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 CACNG4Q9UBN1 327 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 PUF60Q9UHX1 559 aaKnown RBP13.42□□□□□ -0.26
LIG1-217ENST00000599165 CD207Q9UJ71 328 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 DNM3Q9UQ16 869 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 MTMR6Q9Y217 621 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 CLIC4Q9Y696 253 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 STK24Q9Y6E0 443 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 VWA8A3KMH1 1905 aa13.42□□□□□ -0.26
LIG1-217ENST00000599165 VPS37CA5D8V6 355 aaPredicted RBP13.41□□□□□ -0.26
LIG1-217ENST00000599165 K7ELQ4 463 aaPredicted RBP13.41□□□□□ -0.26
LIG1-217ENST00000599165 ABLIM1O14639 778 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 NRP1O14786 923 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 LILRB3O75022 631 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 CLASP2O75122 1294 aaKnown RBP13.41□□□□□ -0.26
LIG1-217ENST00000599165 CTSAP10619 480 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 GUCY2CP25092 1073 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 PEX3P56589 373 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 KRT17Q04695 432 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 RNASELQ05823 741 aaKnown RBP13.41□□□□□ -0.26
LIG1-217ENST00000599165 PRPF4BQ13523 1007 aaKnown RBP13.41□□□□□ -0.26
LIG1-217ENST00000599165 NAB2Q15742 525 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 MAPK6Q16659 721 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 PUS10Q3MIT2 529 aaKnown RBP13.41□□□□□ -0.26
LIG1-217ENST00000599165 ARSHQ5FYA8 562 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 SYCE2Q6PIF2 218 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 USP49Q70CQ1 688 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 TMC7Q7Z402 723 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 ZBTB8OSQ8IWT0 167 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 SYT2Q8N9I0 419 aaPredicted RBP13.41□□□□□ -0.26
LIG1-217ENST00000599165 DEPTORQ8TB45 409 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 URGCPQ8TCY9 931 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 PPP2R3CQ969Q6 453 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms