RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PLS3P13797 630 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 PPM1AP35813 382 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 AFF1P51825 1210 aaKnown RBP17.79■□□□□ 0.44
TRIM28-213ENST00000598355 PEX3P56589 373 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 PRPF4BQ13523 1007 aaKnown RBP17.79■□□□□ 0.44
TRIM28-213ENST00000598355 SPECC1Q5M775 1068 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 SLC39A11Q8N1S5 342 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 SLC17A8Q8NDX2 589 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 PPM1EQ8WY54 764 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 ZNF558Q96NG5 402 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 REEP2Q9BRK0 252 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 NSUN3Q9H649 340 aaKnown RBP17.79■□□□□ 0.44
TRIM28-213ENST00000598355 UBN1Q9NPG3 1134 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 ZDHHC9Q9Y397 364 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 RBM19Q9Y4C8 960 aaKnown RBP17.79■□□□□ 0.44
TRIM28-213ENST00000598355 TTC28Q96AY4 2481 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 CUL9Q8IWT3 2517 aa17.78■□□□□ 0.44
TRIM28-213ENST00000598355 SPTLC2O15270 562 aa17.78■□□□□ 0.44
TRIM28-213ENST00000598355 SSBP05455 408 aaKnown RBP eCLIP17.78■□□□□ 0.44
TRIM28-213ENST00000598355 MCM6Q14566 821 aa17.78■□□□□ 0.44
TRIM28-213ENST00000598355 STK38Q15208 465 aa17.78■□□□□ 0.44
TRIM28-213ENST00000598355 NT5DC1Q5TFE4 455 aa17.78■□□□□ 0.44
TRIM28-213ENST00000598355 GPBP1Q86WP2 473 aa17.78■□□□□ 0.44
TRIM28-213ENST00000598355 CDR2LQ86X02 465 aaPredicted RBP17.78■□□□□ 0.44
TRIM28-213ENST00000598355 POF1BQ8WVV4 589 aa17.78■□□□□ 0.44
TRIM28-213ENST00000598355 RNF39Q9H2S5 420 aa17.78■□□□□ 0.44
TRIM28-213ENST00000598355 NRDE2Q9H7Z3 1164 aa17.78■□□□□ 0.44
TRIM28-213ENST00000598355 GIT1Q9Y2X7 761 aa17.78■□□□□ 0.44
TRIM28-213ENST00000598355 HES2Q9Y543 173 aa17.78■□□□□ 0.44
TRIM28-213ENST00000598355 A0A087X0B3 334 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 ABLIM1O14639 778 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 FSCN2O14926 492 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 NPTXRO95502 500 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 ITGA4P13612 1032 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 DDIT3P35638 169 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 PBX3P40426 434 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 NCKAP1LP55160 1127 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 DSC1Q08554 894 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 LONRF3Q496Y0 759 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 TCEAL5Q5H9L2 206 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 SPOUT1Q5T280 376 aaKnown RBP17.77■□□□□ 0.44
TRIM28-213ENST00000598355 EEF1DP3Q658K8 133 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 SPRYD3Q8NCJ5 442 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 TMEM161BQ8NDZ6 487 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 GSTCDQ8NEC7 633 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 ATXN2LQ8WWM7 1075 aaKnown RBP17.77■□□□□ 0.44
TRIM28-213ENST00000598355 MRPS27Q92552 414 aaKnown RBP17.77■□□□□ 0.44
TRIM28-213ENST00000598355 FIZ1Q96SL8 496 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 PTPRHQ9HD43 1115 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 KMT5AQ9NQR1 393 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 KANSL3Q9P2N6 904 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 TFIP11Q9UBB9 837 aaKnown RBP17.77■□□□□ 0.44
TRIM28-213ENST00000598355 KCNG1Q9UIX4 513 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 COG5Q9UP83 839 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 TNFSF13BQ9Y275 285 aa17.77■□□□□ 0.44
TRIM28-213ENST00000598355 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-213ENST00000598355 NPHP3-ACAD11A0A0J9YXS1 232 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 ARL5CA6NH57 179 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 CCDC169A6NNP5 214 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 SFI1A8K8P3 1242 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 K7ERI5 159 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 PROZP22891 400 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 IRS1P35568 1242 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 TXLNAP40222 546 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 MLH1P40692 756 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 BCAR1P56945 870 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 RAD51AP2Q09MP3 1159 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 GIT2Q14161 759 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 DCAF4L1Q3SXM0 396 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 AXDND1Q5T1B0 1012 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-213ENST00000598355 FOXD4L5Q5VV16 416 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-213ENST00000598355 TMEM173Q86WV6 379 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-213ENST00000598355 THNSL1Q8IYQ7 743 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 HACE1Q8IYU2 909 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 URGCPQ8TCY9 931 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 FOXD4L4Q8WXT5 416 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-213ENST00000598355 TRIM6Q9C030 488 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-213ENST00000598355 TLR9Q9NR96 1032 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 SPG21Q9NZD8 308 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 LARSQ9P2J5 1176 aaKnown RBP17.76■□□□□ 0.43
TRIM28-213ENST00000598355 CCDC39Q9UFE4 941 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 INPP5FQ9Y2H2 1132 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 USP20Q9Y2K6 914 aa17.76■□□□□ 0.43
TRIM28-213ENST00000598355 ANK1P16157 1881 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 SLC16A4O15374 487 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 CUTAO60888 179 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 ZC3H11AO75152 810 aaKnown RBP eCLIP17.75■□□□□ 0.43
TRIM28-213ENST00000598355 DDHD2O94830 711 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 GALTP07902 379 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 MAPTP10636 758 aaKnown RBP17.75■□□□□ 0.43
TRIM28-213ENST00000598355 SCP2P22307 547 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 CACNB1Q02641 598 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-213ENST00000598355 E2F4Q16254 413 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 CTC1Q2NKJ3 1217 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 ATF7IP2Q5U623 682 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 PDE12Q6L8Q7 609 aaKnown RBP17.75■□□□□ 0.43
TRIM28-213ENST00000598355 ZNF280BQ86YH2 543 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 RASSF8Q8NHQ8 419 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 KCNG4Q8TDN1 519 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 ZFP42Q96MM3 310 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms