RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 TDHQ8IZJ6 230 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 ZSWIM2Q8NEG5 633 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 ZNF689Q96CS4 500 aaPredicted RBP11.63□□□□□ -0.55
LIG1-210ENST00000596332 SCLT1Q96NL6 688 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 FTHL17Q9BXU8 183 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 ZHX3Q9H4I2 956 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 SLC39A2Q9NP94 309 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 TNFSF13BQ9Y275 285 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 TTC3P53804 2025 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 MICAL3Q7RTP6 2002 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 SOX1O00570 391 aaPredicted RBP11.62□□□□□ -0.55
LIG1-210ENST00000596332 TBCAO75347 108 aaKnown RBP11.62□□□□□ -0.55
LIG1-210ENST00000596332 AXLP30530 894 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 GATMP50440 423 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 SMTNP53814 917 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 HTRA4P83105 476 aaPredicted RBP11.62□□□□□ -0.55
LIG1-210ENST00000596332 PRPF4BQ13523 1007 aaKnown RBP11.62□□□□□ -0.55
LIG1-210ENST00000596332 CAMK4Q16566 473 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 MAPK6Q16659 721 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 FAM26FQ5R3K3 315 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 L1TD1Q5T7N2 865 aaKnown RBP11.62□□□□□ -0.55
LIG1-210ENST00000596332 ZPBP2Q6X784 338 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 ZBTB8OSQ8IWT0 167 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 TMEM192Q8IY95 271 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 GSTCDQ8NEC7 633 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 PHOSPHO2Q8TCD6 241 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 CLSTN2Q9H4D0 955 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 MRPL44Q9H9J2 332 aaKnown RBP11.62□□□□□ -0.55
LIG1-210ENST00000596332 PIN4Q9Y237 131 aaKnown RBP11.62□□□□□ -0.55
LIG1-210ENST00000596332 GDAQ9Y2T3 454 aa11.62□□□□□ -0.55
LIG1-210ENST00000596332 K7ENM7 598 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 DGKIO75912 1065 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 GJB5O95377 273 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 MYOGP15173 224 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 CD44P16070 742 aaKnown RBP11.61□□□□□ -0.55
LIG1-210ENST00000596332 PBX2P40425 430 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 MCL1Q07820 350 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 MORC3Q14149 939 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 LRIT3Q3SXY7 679 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 CLLU1OSQ5K130 101 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 ZBTB41Q5SVQ8 909 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 ATF7IP2Q5U623 682 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 CRELD2Q6UXH1 353 aaPredicted RBP11.61□□□□□ -0.55
LIG1-210ENST00000596332 LRRC55Q6ZSA7 311 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 RBM43Q6ZSC3 357 aaKnown RBP11.61□□□□□ -0.55
LIG1-210ENST00000596332 SPRED2Q7Z698 418 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 HERC6Q8IVU3 1022 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 SMYD4Q8IYR2 804 aaPredicted RBP11.61□□□□□ -0.55
LIG1-210ENST00000596332 CEP120Q8N960 986 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 SP7Q8TDD2 431 aaPredicted RBP11.61□□□□□ -0.55
LIG1-210ENST00000596332 LPPQ93052 612 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 RNPC3Q96LT9 517 aaKnown RBP11.61□□□□□ -0.55
LIG1-210ENST00000596332 GSDMAQ96QA5 445 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 MED15Q96RN5 788 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 CDT1Q9H211 546 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 KCTD10Q9H3F6 313 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 ELAC1Q9H777 363 aaKnown RBP11.61□□□□□ -0.55
LIG1-210ENST00000596332 FAM105AQ9NUU6 356 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 MIOSQ9NXC5 875 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 KCNG1Q9UIX4 513 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 MAN1B1Q9UKM7 699 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 YBX2Q9Y2T7 364 aaKnown RBP11.61□□□□□ -0.55
LIG1-210ENST00000596332 HES2Q9Y543 173 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 IPPQ9Y573 584 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 PCDHB2Q9Y5E7 798 aa11.61□□□□□ -0.55
LIG1-210ENST00000596332 MYH11P35749 1972 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 A0A0B4J269 797 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 A0A1W2PPC1 479 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 LCHNA4D1U4 455 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 INPPL1O15357 1258 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 EIF3DO15371 548 aaKnown RBP eCLIP11.6□□□□□ -0.55
LIG1-210ENST00000596332 B4GALT3O60512 393 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 KINO60870 393 aaKnown RBP11.6□□□□□ -0.55
LIG1-210ENST00000596332 EFCAB14O75071 495 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 TOM1L1O75674 476 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 ERLIN2O94905 339 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 GCNT3O95395 438 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 EOMESO95936 686 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 ADRB2P07550 413 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 ACTN1P12814 892 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 ZSCAN20P17040 1043 aaPredicted RBP11.6□□□□□ -0.55
LIG1-210ENST00000596332 SCP2P22307 547 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 RABGGTBP53611 331 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 WNT7BP56706 349 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 PSMD2Q13200 908 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 NAB2Q15742 525 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 COBLL1Q53SF7 1204 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 XKR4Q5GH76 650 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 NOTUMQ6P988 496 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 SLC27A1Q6PCB7 646 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 ALKAL1Q6UXT8 129 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 HVCN1Q96D96 273 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 CCDC51Q96ER9 411 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 CASD1Q96PB1 797 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 MRPL4Q9BYD3 311 aaKnown RBP11.6□□□□□ -0.55
LIG1-210ENST00000596332 NXF3Q9H4D5 531 aaKnown RBP11.6□□□□□ -0.55
LIG1-210ENST00000596332 C1orf112Q9NSG2 853 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 TMEM161AQ9NX61 479 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 TMEM63CQ9P1W3 806 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 KIAA1468Q9P260 1216 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms