RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 MARSP56192 900 aaKnown RBP11.46□□□□□ -0.58
VPS4B-204ENST00000589604 ALCAMQ13740 583 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 FILIP1Q7Z7B0 1213 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 RPAINQ86UA6 219 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 VSTM4Q8IW00 320 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 TMEM174Q8WUU8 243 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 TMEM40Q8WWA1 233 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 KIFC3Q9BVG8 833 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 VPS16Q9H269 839 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 ADAMTS10Q9H324 1103 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 ARHGAP28Q9P2N2 729 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 PITPNM1O00562 1244 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 NBNO60934 754 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 IQCF3P0C7M6 154 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 CSF2RAP15509 400 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 RAG1P15918 1043 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 SELPP16109 830 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 MRPS6P82932 125 aaKnown RBP11.45□□□□□ -0.58
VPS4B-204ENST00000589604 TBX2Q13207 712 aaPredicted RBP11.45□□□□□ -0.58
VPS4B-204ENST00000589604 KIZQ2M2Z5 673 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 FAM26DQ5JW98 314 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 TAF2Q6P1X5 1199 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 LRRC8DQ7L1W4 858 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 C16orf59Q7L2K0 433 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 PRPF31Q8WWY3 499 aaKnown RBP11.45□□□□□ -0.58
VPS4B-204ENST00000589604 SLC7A3Q8WY07 619 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 BORCS6Q96GS4 357 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 TUBGCP2Q9BSJ2 902 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 SUCLA2Q9P2R7 463 aaPredicted RBP11.45□□□□□ -0.58
VPS4B-204ENST00000589604 CDY2AQ9Y6F7 541 aa11.45□□□□□ -0.58
VPS4B-204ENST00000589604 CCDC169A6NNP5 214 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 LGALS16A8MUM7 142 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 TISP43B9A030 160 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 CLIC2O15247 247 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 CALUO43852 315 aaPredicted RBP11.44□□□□□ -0.58
VPS4B-204ENST00000589604 CSDE1O75534 798 aaKnown RBP11.44□□□□□ -0.58
VPS4B-204ENST00000589604 FGFR1OPO95684 399 aaKnown RBP11.44□□□□□ -0.58
VPS4B-204ENST00000589604 NR3C1P04150 777 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 NR2F2P24468 414 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 CASP4P49662 377 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 DMP1Q13316 513 aaPredicted RBP11.44□□□□□ -0.58
VPS4B-204ENST00000589604 ADAM9Q13443 819 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 HS1BP3Q53T59 392 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 MFSD5Q6N075 450 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 SLC39A4Q6P5W5 647 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 STXBP4Q6ZWJ1 553 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 CCDC186Q7Z3E2 898 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 MAP4K3Q8IVH8 894 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 FAM114A1Q8IWE2 563 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 TRIM59Q8IWR1 403 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 SLC17A8Q8NDX2 589 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 CAGE1Q8TC20 777 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 HVCN1Q96D96 273 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 ACCSQ96QU6 501 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 GBP3Q9H0R5 595 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 KMT5AQ9NQR1 393 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 AGPAT3Q9NRZ7 376 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 TBX20Q9UMR3 447 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 AKT3Q9Y243 479 aa11.44□□□□□ -0.58
VPS4B-204ENST00000589604 DENND3A2RUS2 1198 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 ANKRD63C9JTQ0 380 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 N4BP3O15049 544 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 AKAP3O75969 853 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 MAGEA10P43363 369 aaPredicted RBP11.43□□□□□ -0.58
VPS4B-204ENST00000589604 NAMPTP43490 491 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 GPC3P51654 580 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 SMTNP53814 917 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 NLRP11P59045 1033 aaKnown RBP11.43□□□□□ -0.58
VPS4B-204ENST00000589604 LAMTOR4Q0VGL1 99 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 BFSP2Q13515 415 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 CAPSQ13938 189 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 LPIN1Q14693 890 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 ARID5BQ14865 1188 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 IER5Q5VY09 327 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 TMC6Q7Z403 805 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 RHPN2Q8IUC4 686 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 SLC9A9Q8IVB4 645 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 C12orf56Q8IXR9 622 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 DRC7Q8IY82 874 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 RETREG2Q8NC44 543 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 KCNF1Q9H3M0 494 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 AGO3Q9H9G7 860 aaKnown RBP11.43□□□□□ -0.58
VPS4B-204ENST00000589604 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.43□□□□□ -0.58
VPS4B-204ENST00000589604 MAGEC2Q9UBF1 373 aaPredicted RBP11.43□□□□□ -0.58
VPS4B-204ENST00000589604 CETN3O15182 167 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 GAS2O43903 313 aaKnown RBP11.43□□□□□ -0.58
VPS4B-204ENST00000589604 EDN1P05305 212 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 ACRP10323 421 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 GHRP10912 638 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 FGFR4P22455 802 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 ADSSP30520 456 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 MTIF2P46199 727 aaKnown RBP11.43□□□□□ -0.58
VPS4B-204ENST00000589604 CEP135Q66GS9 1140 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 DEFB128Q7Z7B8 93 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 EXOC8Q8IYI6 725 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 NME8Q8N427 588 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 IFT74Q96LB3 600 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 ZNF830Q96NB3 372 aaPredicted RBP11.43□□□□□ -0.58
VPS4B-204ENST00000589604 OSMRQ99650 979 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 CELF4Q9BZC1 486 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms