RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 MMP16P51512 607 aa8.02□□□□□ -1.13
ZNF540-206ENST00000589117 MYL7Q01449 175 aa8.02□□□□□ -1.13
ZNF540-206ENST00000589117 BFSP1Q12934 665 aa8.02□□□□□ -1.13
ZNF540-206ENST00000589117 ZC2HC1CQ53FD0 456 aaPredicted RBP8.02□□□□□ -1.13
ZNF540-206ENST00000589117 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.02□□□□□ -1.13
ZNF540-206ENST00000589117 U2AF1L4Q8WU68 220 aaKnown RBP8.02□□□□□ -1.13
ZNF540-206ENST00000589117 HDAC7Q8WUI4 952 aa8.02□□□□□ -1.13
ZNF540-206ENST00000589117 MARVELD3Q96A59 401 aa8.02□□□□□ -1.13
ZNF540-206ENST00000589117 GMLQ99445 158 aa8.02□□□□□ -1.13
ZNF540-206ENST00000589117 KRT12Q99456 494 aa8.02□□□□□ -1.13
ZNF540-206ENST00000589117 SPSB2Q99619 263 aa8.02□□□□□ -1.13
ZNF540-206ENST00000589117 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.02□□□□□ -1.13
ZNF540-206ENST00000589117 PACSIN1Q9BY11 444 aa8.02□□□□□ -1.13
ZNF540-206ENST00000589117 DNAJC12Q9UKB3 198 aa8.02□□□□□ -1.13
ZNF540-206ENST00000589117 EXOC7Q9UPT5 735 aa8.02□□□□□ -1.13
ZNF540-206ENST00000589117 SLX4Q8IY92 1834 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 F8VZ95 297 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 K7ENM7 598 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 MAPK13O15264 365 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 DKC1O60832 514 aaKnown RBP eCLIP8.01□□□□□ -1.13
ZNF540-206ENST00000589117 HIP1RO75146 1068 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 ERLIN2O94905 339 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 TMEM253P0C7T8 217 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 MYBL2P10244 700 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 SFNP31947 248 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 SCTRP47872 440 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 SMTNP53814 917 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 UBXN2AP68543 259 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 DRAP1Q14919 205 aaPredicted RBP8.01□□□□□ -1.13
ZNF540-206ENST00000589117 LINC01559Q495D7 138 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 PCNX4Q63HM2 1172 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 DPY19L2P1Q6NXN4 242 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 MIGA2Q7L4E1 593 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 TMC7Q7Z402 723 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 RHOT2Q8IXI1 618 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 RFFLQ8WZ73 363 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 LRRC45Q96CN5 670 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 INPP4AQ96PE3 977 aaPredicted RBP8.01□□□□□ -1.13
ZNF540-206ENST00000589117 FAM107BQ9H098 131 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 TAF1DQ9H5J8 278 aaPredicted RBP8.01□□□□□ -1.13
ZNF540-206ENST00000589117 SIX2Q9NPC8 291 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 KCNH7Q9NS40 1196 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 GOLGA6L10A0A0M3HER8 536 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 KRIT1O00522 736 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 LYPLA2O95372 231 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 PLS3P13797 630 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 ABCD1P33897 745 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 JAK3P52333 1124 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 MAP3K10Q02779 954 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 MTMR1Q13613 665 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 EZH2Q15910 746 aaKnown RBP8.01□□□□□ -1.13
ZNF540-206ENST00000589117 MSS51Q4VC12 460 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 KIAA1755Q5JYT7 1200 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 XRRA1Q6P2D8 792 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 B3GNT9Q6UX72 402 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 SLFN11Q7Z7L1 901 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 GSPT2Q8IYD1 628 aaKnown RBP8.01□□□□□ -1.13
ZNF540-206ENST00000589117 MREGQ8N565 214 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 LRRC57Q8N9N7 239 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 ZNF341Q9BYN7 854 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 TMEM39BQ9GZU3 492 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 INTS2Q9H0H0 1204 aaKnown RBP8.01□□□□□ -1.13
ZNF540-206ENST00000589117 SLITRK6Q9H5Y7 841 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 KCNG1Q9UIX4 513 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 NFU1Q9UMS0 254 aa8.01□□□□□ -1.13
ZNF540-206ENST00000589117 SCN9AQ15858 1988 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 ANKRD62A6NC57 917 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 DDX3XO00571 662 aaKnown RBP eCLIP8□□□□□ -1.13
ZNF540-206ENST00000589117 MAFGO15525 162 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 ZBED4O75132 1171 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 GLI1P08151 1106 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 VAMP7P51809 220 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 GALCP54803 685 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 RAB15P59190 212 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 MRPL58Q14197 206 aaKnown RBP8□□□□□ -1.13
ZNF540-206ENST00000589117 HLTFQ14527 1009 aaKnown RBP eCLIP8□□□□□ -1.13
ZNF540-206ENST00000589117 OTUD6AQ7L8S5 288 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 C12orf56Q8IXR9 622 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 XXYLT1Q8NBI6 393 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 JDP2Q8WYK2 163 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 HOOK2Q96ED9 719 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 SH3GL2Q99962 352 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 ISCUQ9H1K1 167 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 POLD4Q9HCU8 107 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 SEPT11Q9NVA2 429 aaKnown RBP8□□□□□ -1.13
ZNF540-206ENST00000589117 TMEM59LQ9UK28 342 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 PACSIN2Q9UNF0 486 aaPredicted RBP8□□□□□ -1.13
ZNF540-206ENST00000589117 UTP11Q9Y3A2 253 aaKnown RBP8□□□□□ -1.13
ZNF540-206ENST00000589117 MYH10P35580 1976 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 PFASO15067 1338 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 CNTNAP1P78357 1384 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 ZMYM2Q9UBW7 1377 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 AGPSO00116 658 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 DDX39AO00148 427 aaKnown RBP8□□□□□ -1.13
ZNF540-206ENST00000589117 ZBTB39O15060 712 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 PPFIA4O75335 1185 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 ALAS1P13196 640 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 ITGB5P18084 799 aa8□□□□□ -1.13
ZNF540-206ENST00000589117 CARSP49589 748 aaKnown RBP8□□□□□ -1.13
ZNF540-206ENST00000589117 RNASE9P60153 205 aaKnown RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms