RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.34□□□□□ -0.59
LIG3-203ENST00000585370 CEP72Q9P209 647 aa11.34□□□□□ -0.59
LIG3-203ENST00000585370 FBXL5Q9UKA1 691 aa11.34□□□□□ -0.59
LIG3-203ENST00000585370 MYO6Q9UM54 1294 aa11.34□□□□□ -0.59
LIG3-203ENST00000585370 PLAGL2Q9UPG8 496 aa11.34□□□□□ -0.59
LIG3-203ENST00000585370 PPP2R2CQ9Y2T4 447 aa11.34□□□□□ -0.59
LIG3-203ENST00000585370 DENND3A2RUS2 1198 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 TMEM150BA6NC51 233 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 PMM2O15305 246 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 ASAP2O43150 1006 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 PQBP1O60828 265 aaKnown RBP11.33□□□□□ -0.6
LIG3-203ENST00000585370 ARIH2O95376 493 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 GARTP22102 1010 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 NAMPTP43490 491 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 EFNA5P52803 228 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 KRT83P78385 493 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 KCNMA1Q12791 1236 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 CETN1Q12798 172 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 MXD4Q14582 209 aaPredicted RBP11.33□□□□□ -0.6
LIG3-203ENST00000585370 EXOC3L4Q17RC7 722 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 SLFN12LQ6IEE8 588 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 CCSAPQ6IQ19 270 aaPredicted RBP11.33□□□□□ -0.6
LIG3-203ENST00000585370 TAPT1Q6NXT6 567 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 CACNA2D4Q7Z3S7 1137 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 FBXO16Q8IX29 292 aaPredicted RBP11.33□□□□□ -0.6
LIG3-203ENST00000585370 TXLNBQ8N3L3 684 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 PPP1R13BQ96KQ4 1090 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 CEP89Q96ST8 783 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 TSEN34Q9BSV6 310 aaKnown RBP11.33□□□□□ -0.6
LIG3-203ENST00000585370 POLR3FQ9H1D9 316 aaPredicted RBP11.33□□□□□ -0.6
LIG3-203ENST00000585370 GPRC5CQ9NQ84 441 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 TRMT1Q9NXH9 659 aaKnown RBP11.33□□□□□ -0.6
LIG3-203ENST00000585370 ARHGAP28Q9P2N2 729 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 EPN1Q9Y6I3 576 aaPredicted RBP11.33□□□□□ -0.6
LIG3-203ENST00000585370 MUC3AQ02505 3323 aa11.33□□□□□ -0.6
LIG3-203ENST00000585370 MYH11P35749 1972 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 MYADML2A6NDP7 307 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 KIAA0355O15063 1070 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 ADCY6O43306 1168 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 PPFIA4O75335 1185 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 IPO7O95373 1038 aaKnown RBP11.32□□□□□ -0.6
LIG3-203ENST00000585370 CLTBP09497 229 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 CYP2J2P51589 502 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 ACLYP53396 1101 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 EPHB4P54760 987 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 IRX5P78411 483 aaPredicted RBP11.32□□□□□ -0.6
LIG3-203ENST00000585370 FAAP100Q0VG06 881 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 STRN3Q13033 797 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 ACVR2BQ13705 512 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 KCNA10Q16322 511 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 ZNF484Q5JVG2 852 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 TCERG1LQ5VWI1 586 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 TRMT1LQ7Z2T5 733 aaKnown RBP11.32□□□□□ -0.6
LIG3-203ENST00000585370 ANKRD33Q7Z3H0 272 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 REXO1L1PQ8IX06 675 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 PPTC7Q8NI37 304 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 KIF18AQ8NI77 898 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 DEPTORQ8TB45 409 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 SLC35C1Q96A29 364 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 AGPAT5Q9NUQ2 364 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 ERAP1Q9NZ08 941 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 ZHX1Q9UKY1 873 aaPredicted RBP11.32□□□□□ -0.6
LIG3-203ENST00000585370 ADGRG1Q9Y653 693 aa11.32□□□□□ -0.6
LIG3-203ENST00000585370 MYH9P35579 1960 aaKnown RBP11.32□□□□□ -0.6
LIG3-203ENST00000585370 IGKV6-21A0A0C4DH24 114 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 SOWAHDA6NJG2 315 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 RNF225M0QZC1 329 aaPredicted RBP11.31□□□□□ -0.6
LIG3-203ENST00000585370 MAGEB2O15479 319 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 SORBS3O60504 671 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 DUSP11O75319 330 aaKnown RBP11.31□□□□□ -0.6
LIG3-203ENST00000585370 PIGRP01833 764 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 RFX1P22670 979 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 GTF2H1P32780 548 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 CASP4P49662 377 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 ETF1P62495 437 aaKnown RBP11.31□□□□□ -0.6
LIG3-203ENST00000585370 ARHGAP1Q07960 439 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 BFSP1Q12934 665 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 PLCB4Q15147 1175 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 HSDL1Q3SXM5 330 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 DUSP28Q4G0W2 176 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 DCAF17Q5H9S7 520 aaPredicted RBP11.31□□□□□ -0.6
LIG3-203ENST00000585370 ZNF697Q5TEC3 545 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 PDXDC1Q6P996 788 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 RAD9BQ6WBX8 426 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 ZNF662Q6ZS27 426 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 KSR1Q8IVT5 923 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 TMC2Q8TDI7 906 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 BSNDQ8WZ55 320 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 C16orf45Q96MC5 204 aaPredicted RBP11.31□□□□□ -0.6
LIG3-203ENST00000585370 TOX2Q96NM4 488 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 SH2D3AQ9BRG2 576 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 LSM14BQ9BX40 385 aaKnown RBP11.31□□□□□ -0.6
LIG3-203ENST00000585370 KATNBL1Q9H079 304 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 C2orf40Q9H1Z8 148 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 STARD7Q9NQZ5 370 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 PDGFCQ9NRA1 345 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 FAM207AQ9NSI2 230 aaPredicted RBP11.31□□□□□ -0.6
LIG3-203ENST00000585370 TMEM39AQ9NV64 488 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 HSPBP1Q9NZL4 362 aa11.31□□□□□ -0.6
LIG3-203ENST00000585370 TELO2Q9Y4R8 837 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms