RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 RIC8BQ9NVN3 520 aa5.87□□□□□ -1.47
SS18-223ENST00000583595 USP36Q9P275 1121 aaKnown RBP5.87□□□□□ -1.47
SS18-223ENST00000583595 COA3Q9Y2R0 106 aaPredicted RBP5.87□□□□□ -1.47
SS18-223ENST00000583595 GPR52Q9Y2T5 361 aa5.87□□□□□ -1.47
SS18-223ENST00000583595 RWDD3Q9Y3V2 267 aa5.87□□□□□ -1.47
SS18-223ENST00000583595 SLC4A7Q9Y6M7 1214 aa5.87□□□□□ -1.47
SS18-223ENST00000583595 IRS2Q9Y4H2 1338 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 ZC3H12DA2A288 527 aaKnown RBP5.86□□□□□ -1.47
SS18-223ENST00000583595 FOXP2O15409 715 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 PRPF6O94906 941 aaKnown RBP5.86□□□□□ -1.47
SS18-223ENST00000583595 PYGLP06737 847 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 MYF5P13349 255 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 PTPN1P18031 435 aaKnown RBP5.86□□□□□ -1.47
SS18-223ENST00000583595 SDHAP31040 664 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 GRK6P43250 576 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 CASP5P51878 434 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 SLC16A1P53985 500 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 BCAR1P56945 870 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 GEMIN4P57678 1058 aaKnown RBP5.86□□□□□ -1.47
SS18-223ENST00000583595 PRR5P85299 388 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 TNFAIP2Q03169 654 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 ANO4Q32M45 955 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 JAKMIP3Q5VZ66 844 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 KCTD1Q719H9 257 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 MAEAQ7L5Y9 396 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 GPR155Q7Z3F1 870 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 DAAM2Q86T65 1068 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 FAM129CQ86XR2 697 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 Q8N1Y9 231 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 LZTR1Q8N653 840 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 PPHLN1Q8NEY8 458 aaKnown RBP5.86□□□□□ -1.47
SS18-223ENST00000583595 PLBD2Q8NHP8 589 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 UHMK1Q8TAS1 419 aaKnown RBP5.86□□□□□ -1.47
SS18-223ENST00000583595 KLHDC4Q8TBB5 520 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 CLEC4DQ8WXI8 215 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 SKA1Q96BD8 255 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 TBC1D20Q96BZ9 403 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 TUBGCP5Q96RT8 1024 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 INO80BQ9C086 356 aaPredicted RBP5.86□□□□□ -1.47
SS18-223ENST00000583595 ZCCHC4Q9H5U6 513 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 ARMT1Q9H993 441 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 PARD6AQ9NPB6 346 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 DBR1Q9UK59 544 aaKnown RBP5.86□□□□□ -1.47
SS18-223ENST00000583595 SNX13Q9Y5W8 968 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 NR2E3Q9Y5X4 410 aa5.86□□□□□ -1.47
SS18-223ENST00000583595 BICRAQ9NZM4 1560 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 ZCCHC6Q5VYS8 1495 aaKnown RBP5.85□□□□□ -1.47
SS18-223ENST00000583595 MGEA5O60502 916 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 PFKLP17858 780 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 DEKP35659 375 aaKnown RBP5.85□□□□□ -1.47
SS18-223ENST00000583595 FNTBP49356 437 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 DSC2Q02487 901 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 VMACQ2NL98 169 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 CCDC38Q502W7 563 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 DGKKQ5KSL6 1271 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 IZUMO3Q5VZ72 239 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 APOA5Q6Q788 366 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 PHYKPLQ8IUZ5 450 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 C7orf31Q8N865 590 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 KAT5Q92993 513 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 PWWP2AQ96N64 755 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 MTA3Q9BTC8 594 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 ACE2Q9BYF1 805 aaPredicted RBP5.85□□□□□ -1.47
SS18-223ENST00000583595 MYLK2Q9H1R3 596 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 C14orf93Q9H972 538 aaKnown RBP5.85□□□□□ -1.47
SS18-223ENST00000583595 ATP6V0A4Q9HBG4 840 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 FBLN5Q9UBX5 448 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 RAPGEFL1Q9UHV5 662 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 PCDHGB2Q9Y5G2 931 aa5.85□□□□□ -1.47
SS18-223ENST00000583595 USP19O94966 1318 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 A0A087WV62 115 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.84□□□□□ -1.47
SS18-223ENST00000583595 PRAMEF25A6NGN4 478 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 PRSS47A8MTI9 375 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 KRIT1O00522 736 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 ZNF500O60304 480 aaPredicted RBP5.84□□□□□ -1.47
SS18-223ENST00000583595 TRIM13O60858 407 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 DTNBO60941 627 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 MMEP08473 750 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 GLI4P10075 376 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 GSPT1P15170 499 aaKnown RBP5.84□□□□□ -1.47
SS18-223ENST00000583595 HOXA5P20719 270 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 IGFBP6P24592 240 aaPredicted RBP5.84□□□□□ -1.47
SS18-223ENST00000583595 LIMS1P48059 325 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 MAP2K6P52564 334 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 ZNF543Q08ER8 600 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 DDX10Q13206 875 aaKnown RBP5.84□□□□□ -1.47
SS18-223ENST00000583595 TARBP2Q15633 366 aaKnown RBP5.84□□□□□ -1.47
SS18-223ENST00000583595 PAN2Q504Q3 1202 aaKnown RBP5.84□□□□□ -1.47
SS18-223ENST00000583595 MZT2AQ6P582 158 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 TLDC1Q6P9B6 456 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 SAPCD2Q86UD0 394 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 CABP7Q86V35 215 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 NME9Q86XW9 330 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 MARCH10Q8NA82 808 aaPredicted RBP5.84□□□□□ -1.47
SS18-223ENST00000583595 TRIM63Q969Q1 353 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 FERMT2Q96AC1 680 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 FOXRED1Q96CU9 486 aaPredicted RBP5.84□□□□□ -1.47
SS18-223ENST00000583595 APIPQ96GX9 242 aa5.84□□□□□ -1.47
SS18-223ENST00000583595 GBP4Q96PP9 640 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms