RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 SH3GLB2Q9NR46 395 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 ARHGEF3Q9NR81 526 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 MARCH5Q9NX47 278 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 ASAP2O43150 1006 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 TDP2O95551 362 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 C1RP00736 705 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 QARSP47897 775 aaKnown RBP11.1□□□□□ -0.63
RFFL-208ENST00000581039 NPEPPSP55786 919 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 DSG1Q02413 1049 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 NCBP1Q09161 790 aaKnown RBP11.1□□□□□ -0.63
RFFL-208ENST00000581039 LAMTOR4Q0VGL1 99 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 NTRK3Q16288 839 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 B3GNT9Q6UX72 402 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 TMEM143Q96AN5 459 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 ZNF707Q96C28 371 aaPredicted RBP11.1□□□□□ -0.63
RFFL-208ENST00000581039 SHDQ96IW2 340 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 GAD1Q99259 594 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 PRKD2Q9BZL6 878 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 MINDY3Q9H8M7 445 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 SLC2A4RGQ9NR83 387 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 ZDHHC7Q9NXF8 308 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 PCDHA4Q9UN74 947 aa11.1□□□□□ -0.63
RFFL-208ENST00000581039 DENND4AQ7Z401 1863 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 ARL5CA6NH57 179 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 ANHXE9PGG2 379 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 TGM5O43548 720 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 ERLIN2O94905 339 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 EFEMP2O95967 443 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 IFNAR1P17181 557 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 RFC5P40937 340 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 USP41Q3LFD5 358 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 BLOC1S2Q6QNY1 142 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 GET4Q7L5D6 327 aaPredicted RBP11.09□□□□□ -0.63
RFFL-208ENST00000581039 TRIM22Q8IYM9 498 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 RNF168Q8IYW5 571 aaPredicted RBP11.09□□□□□ -0.63
RFFL-208ENST00000581039 DCLK2Q8N568 766 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 RNF149Q8NC42 400 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 SMG8Q8ND04 991 aaKnown RBP11.09□□□□□ -0.63
RFFL-208ENST00000581039 ETNPPLQ8TBG4 499 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 TCP11Q8WWU5 503 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 JAKMIP1Q96N16 626 aaKnown RBP11.09□□□□□ -0.63
RFFL-208ENST00000581039 RNF39Q9H2S5 420 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.09□□□□□ -0.63
RFFL-208ENST00000581039 CHST7Q9NS84 486 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 DLGAP2Q9P1A6 1054 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 PPME1Q9Y570 386 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 IPPQ9Y573 584 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 ZFP37Q9Y6Q3 630 aaPredicted RBP11.09□□□□□ -0.63
RFFL-208ENST00000581039 NUMBLQ9Y6R0 609 aa11.09□□□□□ -0.63
RFFL-208ENST00000581039 EML1O00423 815 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 KINO60870 393 aaKnown RBP11.08□□□□□ -0.64
RFFL-208ENST00000581039 PAPLNO95428 1278 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 P4HBP07237 508 aaKnown RBP11.08□□□□□ -0.64
RFFL-208ENST00000581039 FSHRP23945 695 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 AXLP30530 894 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 MLH1P40692 756 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 SCNN1GP51170 649 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 STARD6P59095 220 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 GPC5P78333 572 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 CCT2P78371 535 aaKnown RBP11.08□□□□□ -0.64
RFFL-208ENST00000581039 IRX6P78412 446 aaPredicted RBP11.08□□□□□ -0.64
RFFL-208ENST00000581039 CREMQ03060 361 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 DSC1Q08554 894 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 HTR4Q13639 388 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 PCBP1Q15365 356 aaKnown RBP eCLIP11.08□□□□□ -0.64
RFFL-208ENST00000581039 BMP2KLQ5H9B9 411 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 MOXD1Q6UVY6 613 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 OTUD6AQ7L8S5 288 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 GLYCTKQ8IVS8 523 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 GPR65Q8IYL9 337 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 HACE1Q8IYU2 909 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 BLIDQ8IZY5 108 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 FBXL16Q8N461 479 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 ZNF579Q8NAF0 562 aaKnown RBP11.08□□□□□ -0.64
RFFL-208ENST00000581039 ST13P5Q8NFI4 369 aaPredicted RBP11.08□□□□□ -0.64
RFFL-208ENST00000581039 PJA1Q8NG27 643 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 CCDC51Q96ER9 411 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 BORCS6Q96GS4 357 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 B3GALT6Q96L58 329 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 MBOAT7Q96N66 472 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 EIF2AQ9BY44 585 aaKnown RBP11.08□□□□□ -0.64
RFFL-208ENST00000581039 FOXQ1Q9C009 403 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 DHX33Q9H6R0 707 aaKnown RBP11.08□□□□□ -0.64
RFFL-208ENST00000581039 MIOSQ9NXC5 875 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 DLL3Q9NYJ7 618 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 FNIP2Q9P278 1114 aa11.08□□□□□ -0.64
RFFL-208ENST00000581039 DDX25Q9UHL0 483 aaKnown RBP11.08□□□□□ -0.64
RFFL-208ENST00000581039 NID2Q14112 1375 aa11.07□□□□□ -0.64
RFFL-208ENST00000581039 F8W810 466 aa11.07□□□□□ -0.64
RFFL-208ENST00000581039 MARCH6O60337 910 aa11.07□□□□□ -0.64
RFFL-208ENST00000581039 TADA2AO75478 443 aa11.07□□□□□ -0.64
RFFL-208ENST00000581039 ZMYND10O75800 440 aa11.07□□□□□ -0.64
RFFL-208ENST00000581039 YWHABP31946 246 aaKnown RBP11.07□□□□□ -0.64
RFFL-208ENST00000581039 SSRP1Q08945 709 aaKnown RBP11.07□□□□□ -0.64
RFFL-208ENST00000581039 PPP2R5CQ13362 524 aa11.07□□□□□ -0.64
RFFL-208ENST00000581039 SNW1Q13573 536 aaKnown RBP11.07□□□□□ -0.64
RFFL-208ENST00000581039 RSPO4Q2I0M5 234 aaPredicted RBP11.07□□□□□ -0.64
RFFL-208ENST00000581039 NOTUMQ6P988 496 aa11.07□□□□□ -0.64
RFFL-208ENST00000581039 LILRA6Q6PI73 481 aa11.07□□□□□ -0.64
RFFL-208ENST00000581039 FERMT3Q86UX7 667 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms