RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 FAM114A1Q8IWE2 563 aa27.44■■□□□ 1.98
SHMT1-207ENST00000580002 MRPL4Q9BYD3 311 aaKnown RBP27.44■■□□□ 1.98
SHMT1-207ENST00000580002 RTN4Q9NQC3 1192 aaKnown RBP27.44■■□□□ 1.98
SHMT1-207ENST00000580002 STYXL1Q9Y6J8 313 aa27.44■■□□□ 1.98
SHMT1-207ENST00000580002 A0A0U1RQG5 324 aaPredicted RBP27.43■■□□□ 1.98
SHMT1-207ENST00000580002 ARVCFO00192 962 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 CHRNA1P02708 482 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 ADRB2P07550 413 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 SPAG1Q07617 926 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 FAM186BQ8IYM0 893 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 CCDC155Q8N6L0 562 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 SPC24Q8NBT2 197 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 PLEKHO2Q8TD55 490 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 SENP6Q9GZR1 1112 aaPredicted RBP27.43■■□□□ 1.98
SHMT1-207ENST00000580002 CDY2AQ9Y6F7 541 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 N4BP3O15049 544 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 DARSP14868 501 aaKnown RBP27.43■■□□□ 1.98
SHMT1-207ENST00000580002 SNX17Q15036 470 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 TRIM59Q8IWR1 403 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 XXYLT1Q8NBI6 393 aa27.43■■□□□ 1.98
SHMT1-207ENST00000580002 NOC4LQ9BVI4 516 aaKnown RBP27.43■■□□□ 1.98
SHMT1-207ENST00000580002 GCOM2Q9BZD3 368 aaPredicted RBP27.43■■□□□ 1.98
SHMT1-207ENST00000580002 TSPAN1O60635 241 aa27.42■■□□□ 1.98
SHMT1-207ENST00000580002 ARF4P18085 180 aaPredicted RBP27.42■■□□□ 1.98
SHMT1-207ENST00000580002 PSMC2P35998 433 aaKnown RBP27.42■■□□□ 1.98
SHMT1-207ENST00000580002 CDK7P50613 346 aa27.42■■□□□ 1.98
SHMT1-207ENST00000580002 ATN1P54259 1190 aaPredicted RBP27.42■■□□□ 1.98
SHMT1-207ENST00000580002 MRPS6P82932 125 aaKnown RBP27.42■■□□□ 1.98
SHMT1-207ENST00000580002 TRIM71Q2Q1W2 868 aaKnown RBP27.42■■□□□ 1.98
SHMT1-207ENST00000580002 SRGAP1Q7Z6B7 1085 aa27.42■■□□□ 1.98
SHMT1-207ENST00000580002 NME8Q8N427 588 aa27.42■■□□□ 1.98
SHMT1-207ENST00000580002 PDLIM2Q96JY6 352 aa27.42■■□□□ 1.98
SHMT1-207ENST00000580002 CELF4Q9BZC1 486 aaKnown RBP27.42■■□□□ 1.98
SHMT1-207ENST00000580002 PTPRHQ9HD43 1115 aa27.42■■□□□ 1.98
SHMT1-207ENST00000580002 PRMT7Q9NVM4 692 aaPredicted RBP27.42■■□□□ 1.98
SHMT1-207ENST00000580002 CGNQ9P2M7 1197 aaKnown RBP27.42■■□□□ 1.98
SHMT1-207ENST00000580002 TULP1O00294 542 aaPredicted RBP27.41■■□□□ 1.98
SHMT1-207ENST00000580002 PES1O00541 588 aaKnown RBP27.41■■□□□ 1.98
SHMT1-207ENST00000580002 ABCD1P33897 745 aa27.41■■□□□ 1.98
SHMT1-207ENST00000580002 THPOP40225 353 aa27.41■■□□□ 1.98
SHMT1-207ENST00000580002 MATR3P43243 847 aaKnown RBP eCLIP27.41■■□□□ 1.98
SHMT1-207ENST00000580002 ACOT2P49753 483 aa27.41■■□□□ 1.98
SHMT1-207ENST00000580002 MARSP56192 900 aaKnown RBP27.41■■□□□ 1.98
SHMT1-207ENST00000580002 SNRPFP62306 86 aaKnown RBP27.41■■□□□ 1.98
SHMT1-207ENST00000580002 FAM187BQ17R55 369 aa27.41■■□□□ 1.98
SHMT1-207ENST00000580002 ATF7IP2Q5U623 682 aa27.41■■□□□ 1.98
SHMT1-207ENST00000580002 ZPBP2Q6X784 338 aa27.41■■□□□ 1.98
SHMT1-207ENST00000580002 MRFAP1L1Q96HT8 127 aa27.41■■□□□ 1.98
SHMT1-207ENST00000580002 FAM213AQ9BRX8 229 aa27.41■■□□□ 1.98
SHMT1-207ENST00000580002 A0A0B4J269 797 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 EPB41P11171 864 aaKnown RBP27.4■■□□□ 1.98
SHMT1-207ENST00000580002 GARTP22102 1010 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 SCP2P22307 547 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 EIF4BP23588 611 aaKnown RBP27.4■■□□□ 1.98
SHMT1-207ENST00000580002 WNT7BP56706 349 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 DLG4P78352 724 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 PTPN11Q06124 597 aaPredicted RBP27.4■■□□□ 1.98
SHMT1-207ENST00000580002 MYBPC2Q14324 1141 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 CRELD2Q6UXH1 353 aaPredicted RBP27.4■■□□□ 1.98
SHMT1-207ENST00000580002 TSHZ1Q6ZSZ6 1077 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 TMEM174Q8WUU8 243 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 FAM84AQ96KN4 292 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 TCHPQ9BT92 498 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 ARMCX3Q9UH62 379 aaPredicted RBP27.4■■□□□ 1.98
SHMT1-207ENST00000580002 NOD1Q9Y239 953 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 FRMD4BQ9Y2L6 1034 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 SLC16A3O15427 465 aaKnown RBP27.4■■□□□ 1.98
SHMT1-207ENST00000580002 GNA14O95837 355 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 PROZP22891 400 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 HOXA11P31270 313 aaPredicted RBP27.4■■□□□ 1.98
SHMT1-207ENST00000580002 CRYBB1P53674 252 aaPredicted RBP27.4■■□□□ 1.98
SHMT1-207ENST00000580002 MGAT3Q09327 533 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 TMEM132AQ24JP5 1023 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 FRMD5Q7Z6J6 570 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 MSTO1Q9BUK6 570 aa27.4■■□□□ 1.98
SHMT1-207ENST00000580002 AGO2Q9UKV8 859 aaKnown RBP27.4■■□□□ 1.98
SHMT1-207ENST00000580002 NOC2LQ9Y3T9 749 aaKnown RBP27.4■■□□□ 1.98
SHMT1-207ENST00000580002 MKI67P46013 3256 aaKnown RBP27.39■■□□□ 1.98
SHMT1-207ENST00000580002 TOM1L1O75674 476 aa27.39■■□□□ 1.98
SHMT1-207ENST00000580002 PTK7Q13308 1070 aa27.39■■□□□ 1.98
SHMT1-207ENST00000580002 VWA3BQ502W6 1294 aa27.39■■□□□ 1.98
SHMT1-207ENST00000580002 CEP120Q8N960 986 aa27.39■■□□□ 1.98
SHMT1-207ENST00000580002 ANKRD20A12PQ8NF67 263 aa27.39■■□□□ 1.98
SHMT1-207ENST00000580002 ANP32BQ92688 251 aaKnown RBP27.39■■□□□ 1.98
SHMT1-207ENST00000580002 PDZD7Q9H5P4 517 aa27.39■■□□□ 1.98
SHMT1-207ENST00000580002 KIAA0100Q14667 2235 aaKnown RBP27.39■■□□□ 1.98
SHMT1-207ENST00000580002 CLDN3O15551 220 aa27.38■■□□□ 1.97
SHMT1-207ENST00000580002 TRIM49P0CI25 452 aa27.38■■□□□ 1.97
SHMT1-207ENST00000580002 TRIM49CP0CI26 452 aa27.38■■□□□ 1.97
SHMT1-207ENST00000580002 TNFSF9P41273 254 aa27.38■■□□□ 1.97
SHMT1-207ENST00000580002 SNRNP35Q16560 246 aaKnown RBP27.38■■□□□ 1.97
SHMT1-207ENST00000580002 MAN2A1Q16706 1144 aa27.38■■□□□ 1.97
SHMT1-207ENST00000580002 DCAF17Q5H9S7 520 aaPredicted RBP27.38■■□□□ 1.97
SHMT1-207ENST00000580002 CATSPER4Q7RTX7 472 aa27.38■■□□□ 1.97
SHMT1-207ENST00000580002 FBXL18Q96ME1 805 aa27.38■■□□□ 1.97
SHMT1-207ENST00000580002 MCOLN1Q9GZU1 580 aa27.38■■□□□ 1.97
SHMT1-207ENST00000580002 NDST4Q9H3R1 872 aa27.38■■□□□ 1.97
SHMT1-207ENST00000580002 TRPV2Q9Y5S1 764 aa27.38■■□□□ 1.97
SHMT1-207ENST00000580002 CNTNAP2Q9UHC6 1331 aa27.38■■□□□ 1.97
SHMT1-207ENST00000580002 LGALS16A8MUM7 142 aa27.37■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms