RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 PBX3P40426 434 aa16.38■□□□□ 0.21
SS18-212ENST00000579061 UBA7P41226 1012 aa16.38■□□□□ 0.21
SS18-212ENST00000579061 ERVFC1P60507 584 aa16.38■□□□□ 0.21
SS18-212ENST00000579061 PRPF4BQ13523 1007 aaKnown RBP16.38■□□□□ 0.21
SS18-212ENST00000579061 HSCBQ8IWL3 235 aa16.38■□□□□ 0.21
SS18-212ENST00000579061 DAW1Q8N136 415 aa16.38■□□□□ 0.21
SS18-212ENST00000579061 EFHBQ8N7U6 833 aa16.38■□□□□ 0.21
SS18-212ENST00000579061 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.38■□□□□ 0.21
SS18-212ENST00000579061 CALML4Q96GE6 196 aa16.38■□□□□ 0.21
SS18-212ENST00000579061 TMEM169Q96HH4 297 aa16.38■□□□□ 0.21
SS18-212ENST00000579061 CDCA3Q99618 268 aaPredicted RBP16.38■□□□□ 0.21
SS18-212ENST00000579061 RUSC1Q9BVN2 902 aa16.38■□□□□ 0.21
SS18-212ENST00000579061 TLE6Q9H808 572 aa16.38■□□□□ 0.21
SS18-212ENST00000579061 STK39Q9UEW8 545 aa16.38■□□□□ 0.21
SS18-212ENST00000579061 MORC2Q9Y6X9 1032 aaPredicted RBP16.38■□□□□ 0.21
SS18-212ENST00000579061 ARL5CA6NH57 179 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 STX6O43752 255 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 HIP1RO75146 1068 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 CSPG5O95196 566 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 NPTXRO95502 500 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 SLC12A3P55017 1021 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 MAPK7Q13164 816 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 DMP1Q13316 513 aaPredicted RBP16.37■□□□□ 0.21
SS18-212ENST00000579061 BMS1Q14692 1282 aaKnown RBP16.37■□□□□ 0.21
SS18-212ENST00000579061 PTPAQ15257 358 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 ZRSR1Q15695 479 aaKnown RBP16.37■□□□□ 0.21
SS18-212ENST00000579061 IGSF21Q96ID5 467 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 FAM193BQ96PV7 902 aaPredicted RBP16.37■□□□□ 0.21
SS18-212ENST00000579061 ADPGKQ9BRR6 497 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 RNF39Q9H2S5 420 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 IGFLR1Q9H665 355 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 TMEM134Q9H6X4 195 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 FAM50BQ9Y247 325 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 RBM19Q9Y4C8 960 aaKnown RBP16.37■□□□□ 0.21
SS18-212ENST00000579061 MYH15Q9Y2K3 1946 aa16.37■□□□□ 0.21
SS18-212ENST00000579061 GRXCR2A6NFK2 248 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 NT5C1B-RDH14C9J2C7 533 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 K7ERI5 159 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 TNFRSF10AO00220 468 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 DDHD2O94830 711 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 ALDH2P05091 517 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 GTF2F1P35269 517 aaKnown RBP eCLIP16.36■□□□□ 0.21
SS18-212ENST00000579061 NPTX2P47972 431 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 NRIP1P48552 1158 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 SLC11A1P49279 550 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 AFF1P51825 1210 aaKnown RBP16.36■□□□□ 0.21
SS18-212ENST00000579061 PEX3P56589 373 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 DUSP6Q16828 381 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 EP400NLQ6ZTU2 488 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 TMC7Q7Z402 723 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 DDX53Q86TM3 631 aaKnown RBP16.36■□□□□ 0.21
SS18-212ENST00000579061 CDR2LQ86X02 465 aaPredicted RBP16.36■□□□□ 0.21
SS18-212ENST00000579061 ZNF280BQ86YH2 543 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 GAD1Q99259 594 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 TCF25Q9BQ70 676 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 NTPCRQ9BSD7 190 aaKnown RBP16.36■□□□□ 0.21
SS18-212ENST00000579061 CCSER1Q9C0I3 900 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 GBP3Q9H0R5 595 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 NXF3Q9H4D5 531 aaKnown RBP16.36■□□□□ 0.21
SS18-212ENST00000579061 PDZD7Q9H5P4 517 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 POLD4Q9HCU8 107 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 ENTPD7Q9NQZ7 604 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 FOXD4L1Q9NU39 408 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 ARHGAP28Q9P2N2 729 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 DNAJB4Q9UDY4 337 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 HES2Q9Y543 173 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 CLIC4Q9Y696 253 aa16.36■□□□□ 0.21
SS18-212ENST00000579061 CCDC169A6NNP5 214 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 H3BQ06 376 aaPredicted RBP16.35■□□□□ 0.21
SS18-212ENST00000579061 TBX10O75333 385 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 POMCP01189 267 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 PLA2G4BP0C869 781 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 DSC1Q08554 894 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 SMC1AQ14683 1233 aaKnown RBP16.35■□□□□ 0.21
SS18-212ENST00000579061 TMEM132AQ24JP5 1023 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 DCAF4L1Q3SXM0 396 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 PLPP4Q5VZY2 271 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 PTCRAQ6ISU1 281 aaPredicted RBP16.35■□□□□ 0.21
SS18-212ENST00000579061 APBB1IPQ7Z5R6 666 aaPredicted RBP16.35■□□□□ 0.21
SS18-212ENST00000579061 COLGALT2Q8IYK4 626 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 SPIRE2Q8WWL2 714 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 PLIN2Q99541 437 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 KIFC3Q9BVG8 833 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 ZBP1Q9H171 429 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 KMT5AQ9NQR1 393 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 FAN1Q9Y2M0 1017 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 PCDHGC5Q9Y5F6 944 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 SRPRBQ9Y5M8 271 aaKnown RBP16.35■□□□□ 0.21
SS18-212ENST00000579061 IRAK3Q9Y616 596 aa16.35■□□□□ 0.21
SS18-212ENST00000579061 TTLL13PA6NNM8 815 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 LINC01565O15544 149 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 B4GALT3O60512 393 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 EDN1P05305 212 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 SSBP05455 408 aaKnown RBP eCLIP16.34■□□□□ 0.21
SS18-212ENST00000579061 MLH1P40692 756 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 NDUFV1P49821 464 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 SCNN1GP51170 649 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 GRIN1Q05586 938 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 DLX2Q07687 328 aaPredicted RBP16.34■□□□□ 0.21
SS18-212ENST00000579061 GIT2Q14161 759 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms