RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 PDCD11Q14690 1871 aaKnown RBP19.96■□□□□ 0.79
CCDC40-213ENST00000574933 GBF1Q92538 1859 aa19.96■□□□□ 0.79
CCDC40-213ENST00000574933 C9IYK1 514 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 RBAK-RBAKDNI3L0D1 243 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 ABLIM1O14639 778 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 N4BP3O15049 544 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 ZNF623O75123 536 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 PRPF6O94906 941 aaKnown RBP19.95■□□□□ 0.78
CCDC40-213ENST00000574933 HOXD13P35453 343 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 MORC3Q14149 939 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 UBXN11Q5T124 520 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 CCDC183Q5T5S1 534 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 ZNF658Q5TYW1 1059 aaPredicted RBP19.95■□□□□ 0.78
CCDC40-213ENST00000574933 ATF7IP2Q5U623 682 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 CPB2Q96IY4 423 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 TARS2Q9BW92 718 aaKnown RBP19.95■□□□□ 0.78
CCDC40-213ENST00000574933 PRO3102Q9H379 93 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 PDZD7Q9H5P4 517 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 TMEM206Q9H813 350 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 EXOC7Q9UPT5 735 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 STYXL1Q9Y6J8 313 aa19.95■□□□□ 0.78
CCDC40-213ENST00000574933 RALGAPA2Q2PPJ7 1873 aa19.94■□□□□ 0.78
CCDC40-213ENST00000574933 TDRD15B5MCY1 1934 aaKnown RBP19.94■□□□□ 0.78
CCDC40-213ENST00000574933 A0A0U1RQF3 1178 aa19.94■□□□□ 0.78
CCDC40-213ENST00000574933 TOM1L1O75674 476 aa19.94■□□□□ 0.78
CCDC40-213ENST00000574933 KCNA1Q09470 495 aa19.94■□□□□ 0.78
CCDC40-213ENST00000574933 SLC27A1Q6PCB7 646 aa19.94■□□□□ 0.78
CCDC40-213ENST00000574933 SLC24A5Q71RS6 500 aa19.94■□□□□ 0.78
CCDC40-213ENST00000574933 CRIPAKQ8N1N5 446 aa19.94■□□□□ 0.78
CCDC40-213ENST00000574933 GUF1Q8N442 669 aaKnown RBP19.94■□□□□ 0.78
CCDC40-213ENST00000574933 TMEM63CQ9P1W3 806 aa19.94■□□□□ 0.78
CCDC40-213ENST00000574933 GDAQ9Y2T3 454 aa19.94■□□□□ 0.78
CCDC40-213ENST00000574933 ZMYM2Q9UBW7 1377 aa19.94■□□□□ 0.78
CCDC40-213ENST00000574933 BMP6P22004 513 aa19.93■□□□□ 0.78
CCDC40-213ENST00000574933 RAB27AP51159 221 aa19.93■□□□□ 0.78
CCDC40-213ENST00000574933 WDR5P61964 334 aaKnown RBP19.93■□□□□ 0.78
CCDC40-213ENST00000574933 SNRPFP62306 86 aaKnown RBP19.93■□□□□ 0.78
CCDC40-213ENST00000574933 EEF1DP3Q658K8 133 aa19.93■□□□□ 0.78
CCDC40-213ENST00000574933 TWF2Q6IBS0 349 aaKnown RBP19.93■□□□□ 0.78
CCDC40-213ENST00000574933 SLC39A4Q6P5W5 647 aa19.93■□□□□ 0.78
CCDC40-213ENST00000574933 MPZL3Q6UWV2 235 aa19.93■□□□□ 0.78
CCDC40-213ENST00000574933 OTOP2Q7RTS6 562 aa19.93■□□□□ 0.78
CCDC40-213ENST00000574933 MYOCDQ8IZQ8 938 aa19.93■□□□□ 0.78
CCDC40-213ENST00000574933 UBE2OQ9C0C9 1292 aaKnown RBP19.93■□□□□ 0.78
CCDC40-213ENST00000574933 MTIF3Q9H2K0 278 aaKnown RBP19.93■□□□□ 0.78
CCDC40-213ENST00000574933 ELAC1Q9H777 363 aaKnown RBP19.93■□□□□ 0.78
CCDC40-213ENST00000574933 USP20Q9Y2K6 914 aa19.93■□□□□ 0.78
CCDC40-213ENST00000574933 HNRNPDLO14979 420 aaKnown RBP19.92■□□□□ 0.78
CCDC40-213ENST00000574933 KIF20AO95235 890 aa19.92■□□□□ 0.78
CCDC40-213ENST00000574933 SKIP12755 728 aa19.92■□□□□ 0.78
CCDC40-213ENST00000574933 LIG4P49917 911 aa19.92■□□□□ 0.78
CCDC40-213ENST00000574933 KNOP1Q1ED39 458 aaKnown RBP19.92■□□□□ 0.78
CCDC40-213ENST00000574933 DCAF4L1Q3SXM0 396 aa19.92■□□□□ 0.78
CCDC40-213ENST00000574933 APBB1IPQ7Z5R6 666 aaPredicted RBP19.92■□□□□ 0.78
CCDC40-213ENST00000574933 MRPL10Q7Z7H8 261 aaKnown RBP19.92■□□□□ 0.78
CCDC40-213ENST00000574933 ZNF598Q86UK7 904 aaKnown RBP19.92■□□□□ 0.78
CCDC40-213ENST00000574933 SYAP1Q96A49 352 aaPredicted RBP19.92■□□□□ 0.78
CCDC40-213ENST00000574933 ADPGKQ9BRR6 497 aa19.92■□□□□ 0.78
CCDC40-213ENST00000574933 FAM105AQ9NUU6 356 aa19.92■□□□□ 0.78
CCDC40-213ENST00000574933 RNF216Q9NWF9 866 aaPredicted RBP19.92■□□□□ 0.78
CCDC40-213ENST00000574933 CGNQ9P2M7 1197 aaKnown RBP19.92■□□□□ 0.78
CCDC40-213ENST00000574933 TRIOBPQ9H2D6 2365 aa19.92■□□□□ 0.78
CCDC40-213ENST00000574933 TGFB1I1O43294 461 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 EOMESO95936 686 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 MCF2P10911 925 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 PPP1R2P41236 205 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 MCL1Q07820 350 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 SHHQ15465 462 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 C9orf50Q5SZB4 431 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 SLFN12LQ6IEE8 588 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.91■□□□□ 0.78
CCDC40-213ENST00000574933 ECHDC2Q86YB7 292 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 PHOSPHO2Q8TCD6 241 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 TMEM174Q8WUU8 243 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 BICD1Q96G01 975 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 ZBTB45Q96K62 511 aaPredicted RBP19.91■□□□□ 0.78
CCDC40-213ENST00000574933 EIF2AQ9BY44 585 aaKnown RBP19.91■□□□□ 0.78
CCDC40-213ENST00000574933 GBP3Q9H0R5 595 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 KCTD10Q9H3F6 313 aa19.91■□□□□ 0.78
CCDC40-213ENST00000574933 CXXC1Q9P0U4 656 aaPredicted RBP19.91■□□□□ 0.78
CCDC40-213ENST00000574933 A0A0B4J269 797 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 ANKRD63C9JTQ0 380 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 AMHP03971 560 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 ATF7P17544 494 aaPredicted RBP19.9■□□□□ 0.78
CCDC40-213ENST00000574933 GARTP22102 1010 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 PRCPP42785 496 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 NOLC1Q14978 699 aaKnown RBP eCLIP19.9■□□□□ 0.78
CCDC40-213ENST00000574933 TMEM132AQ24JP5 1023 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 CDR2LQ86X02 465 aaPredicted RBP19.9■□□□□ 0.78
CCDC40-213ENST00000574933 C12orf56Q8IXR9 622 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 SYCP3Q8IZU3 236 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 ADSSL1Q8N142 457 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 TOP1MTQ969P6 601 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 SLC9A7Q96T83 725 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 HAPLN2Q9GZV7 340 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 CDT1Q9H211 546 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 TMEM161AQ9NX61 479 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 PCDHB2Q9Y5E7 798 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 COL4A6Q14031 1691 aa19.9■□□□□ 0.78
CCDC40-213ENST00000574933 PDXKO00764 312 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms