RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 MTIF3Q9H2K0 278 aaKnown RBP18.73■□□□□ 0.59
NUP88-210ENST00000574867 RAB27AP51159 221 aa18.73■□□□□ 0.59
NUP88-210ENST00000574867 EPHB4P54760 987 aa18.73■□□□□ 0.59
NUP88-210ENST00000574867 TCTN1Q2MV58 587 aa18.73■□□□□ 0.59
NUP88-210ENST00000574867 TMEM240Q5SV17 173 aa18.73■□□□□ 0.59
NUP88-210ENST00000574867 ZNF365Q70YC5 407 aa18.73■□□□□ 0.59
NUP88-210ENST00000574867 SYCP3Q8IZU3 236 aa18.73■□□□□ 0.59
NUP88-210ENST00000574867 GDF15Q99988 308 aa18.73■□□□□ 0.59
NUP88-210ENST00000574867 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.73■□□□□ 0.59
NUP88-210ENST00000574867 PDZD7Q9H5P4 517 aa18.73■□□□□ 0.59
NUP88-210ENST00000574867 RGS18Q9NS28 235 aa18.73■□□□□ 0.59
NUP88-210ENST00000574867 ZMYM2Q9UBW7 1377 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 TTLL13PA6NNM8 815 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 BIN1O00499 593 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 MGEA5O60502 916 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 KCNA1Q09470 495 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 STIM1Q13586 685 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 LINC01599Q8WXQ3 324 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 RNF216Q9NWF9 866 aaPredicted RBP18.72■□□□□ 0.59
NUP88-210ENST00000574867 CEP290O15078 2479 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 SKIP12755 728 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 PROZP22891 400 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 SNRPFP62306 86 aaKnown RBP18.72■□□□□ 0.59
NUP88-210ENST00000574867 KNOP1Q1ED39 458 aaKnown RBP18.72■□□□□ 0.59
NUP88-210ENST00000574867 DCAF4L1Q3SXM0 396 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 MPZL3Q6UWV2 235 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 SLC24A5Q71RS6 500 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 GBP3Q9H0R5 595 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 PTPRHQ9HD43 1115 aa18.72■□□□□ 0.59
NUP88-210ENST00000574867 TNRC18O15417 2968 aaPredicted RBP18.71■□□□□ 0.59
NUP88-210ENST00000574867 LETM1O95202 739 aaPredicted RBP18.71■□□□□ 0.59
NUP88-210ENST00000574867 HOXD13P35453 343 aa18.71■□□□□ 0.59
NUP88-210ENST00000574867 ZNF568Q3ZCX4 644 aa18.71■□□□□ 0.59
NUP88-210ENST00000574867 SLFN12LQ6IEE8 588 aa18.71■□□□□ 0.59
NUP88-210ENST00000574867 OTOP2Q7RTS6 562 aa18.71■□□□□ 0.59
NUP88-210ENST00000574867 NELFCDQ8IXH7 590 aa18.71■□□□□ 0.59
NUP88-210ENST00000574867 HERVK_113Q902F9 699 aa18.71■□□□□ 0.59
NUP88-210ENST00000574867 TRIM6Q9C030 488 aaPredicted RBP18.71■□□□□ 0.59
NUP88-210ENST00000574867 CGNQ9P2M7 1197 aaKnown RBP18.71■□□□□ 0.59
NUP88-210ENST00000574867 ANKFY1Q9P2R3 1169 aa18.71■□□□□ 0.59
NUP88-210ENST00000574867 USP20Q9Y2K6 914 aa18.71■□□□□ 0.59
NUP88-210ENST00000574867 KCNJ6P48051 423 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 ISM2Q6H9L7 571 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 HS2ST1Q7LGA3 356 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 SMYD4Q8IYR2 804 aaPredicted RBP18.7■□□□□ 0.58
NUP88-210ENST00000574867 GOLGA5Q8TBA6 731 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 TCHPQ9BT92 498 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 FAM105AQ9NUU6 356 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 A0A0U1RQF3 1178 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 C9IYK1 514 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 ENPP3O14638 875 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 CLDN3O15551 220 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 MCF2P10911 925 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 BMP6P22004 513 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 PRCPP42785 496 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 WDR5P61964 334 aaKnown RBP18.7■□□□□ 0.58
NUP88-210ENST00000574867 MCL1Q07820 350 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 NOLC1Q14978 699 aaKnown RBP eCLIP18.7■□□□□ 0.58
NUP88-210ENST00000574867 UBXN11Q5T124 520 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 EEF1DP3Q658K8 133 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 RTN4RL1Q86UN2 441 aaPredicted RBP18.7■□□□□ 0.58
NUP88-210ENST00000574867 ADSSL1Q8N142 457 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 UBE2OQ9C0C9 1292 aaKnown RBP18.7■□□□□ 0.58
NUP88-210ENST00000574867 STYXL1Q9Y6J8 313 aa18.7■□□□□ 0.58
NUP88-210ENST00000574867 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.69■□□□□ 0.58
NUP88-210ENST00000574867 ABLIM1O14639 778 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 AMHP03971 560 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 BMP8BP34820 402 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 SLC39A4Q6P5W5 647 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 CDR2LQ86X02 465 aaPredicted RBP18.69■□□□□ 0.58
NUP88-210ENST00000574867 HACE1Q8IYU2 909 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 CDT1Q9H211 546 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 TYW1Q9NV66 732 aaKnown RBP18.69■□□□□ 0.58
NUP88-210ENST00000574867 MAPK8IP1Q9UQF2 711 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 ZBBXA8MT70 800 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 PSMA7O14818 248 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 ZNF623O75123 536 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 NPTXRO95502 500 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 MATR3P43243 847 aaKnown RBP eCLIP18.69■□□□□ 0.58
NUP88-210ENST00000574867 SASS6Q6UVJ0 657 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 MLKLQ8NB16 471 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 EIF2AQ9BY44 585 aaKnown RBP18.69■□□□□ 0.58
NUP88-210ENST00000574867 KCTD10Q9H3F6 313 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 ELAC1Q9H777 363 aaKnown RBP18.69■□□□□ 0.58
NUP88-210ENST00000574867 PCDHB2Q9Y5E7 798 aa18.69■□□□□ 0.58
NUP88-210ENST00000574867 ANKRD63C9JTQ0 380 aa18.68■□□□□ 0.58
NUP88-210ENST00000574867 PDXKO00764 312 aa18.68■□□□□ 0.58
NUP88-210ENST00000574867 KIAA0391O15091 583 aaKnown RBP18.68■□□□□ 0.58
NUP88-210ENST00000574867 TGFB1I1O43294 461 aa18.68■□□□□ 0.58
NUP88-210ENST00000574867 GARTP22102 1010 aa18.68■□□□□ 0.58
NUP88-210ENST00000574867 NLRP12P59046 1061 aa18.68■□□□□ 0.58
NUP88-210ENST00000574867 FAM189BP81408 668 aa18.68■□□□□ 0.58
NUP88-210ENST00000574867 POMGNT1Q8WZA1 660 aa18.68■□□□□ 0.58
NUP88-210ENST00000574867 DHTKD1Q96HY7 919 aaPredicted RBP18.68■□□□□ 0.58
NUP88-210ENST00000574867 AGPAT3Q9NRZ7 376 aa18.68■□□□□ 0.58
NUP88-210ENST00000574867 TMEM161AQ9NX61 479 aa18.68■□□□□ 0.58
NUP88-210ENST00000574867 DACH1Q9UI36 760 aa18.68■□□□□ 0.58
NUP88-210ENST00000574867 TTC3P53804 2025 aa18.68■□□□□ 0.58
NUP88-210ENST00000574867 A0A0B4J269 797 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 RBAK-RBAKDNI3L0D1 243 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms