RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 SMAP1Q8IYB5 467 aaPredicted RBP14.72□□□□□ -0.05
CCDC40-208ENST00000572270 MAP4K1Q92918 833 aa14.72□□□□□ -0.05
CCDC40-208ENST00000572270 ANO3Q9BYT9 981 aa14.72□□□□□ -0.05
CCDC40-208ENST00000572270 NRBP2Q9NSY0 501 aa14.72□□□□□ -0.05
CCDC40-208ENST00000572270 RCAN3Q9UKA8 241 aa14.72□□□□□ -0.05
CCDC40-208ENST00000572270 POLIQ9UNA4 740 aa14.72□□□□□ -0.05
CCDC40-208ENST00000572270 SAMM50Q9Y512 469 aa14.72□□□□□ -0.05
CCDC40-208ENST00000572270 PCDHB2Q9Y5E7 798 aa14.72□□□□□ -0.05
CCDC40-208ENST00000572270 DOCK6Q96HP0 2047 aa14.71□□□□□ -0.05
CCDC40-208ENST00000572270 SRRM3A6NNA2 597 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-208ENST00000572270 IPO5O00410 1097 aaKnown RBP14.71□□□□□ -0.05
CCDC40-208ENST00000572270 NR1I2O75469 434 aa14.71□□□□□ -0.05
CCDC40-208ENST00000572270 PLEKHA8P1O95397 391 aa14.71□□□□□ -0.05
CCDC40-208ENST00000572270 OATP04181 439 aa14.71□□□□□ -0.05
CCDC40-208ENST00000572270 SF3A2Q15428 464 aaKnown RBP14.71□□□□□ -0.05
CCDC40-208ENST00000572270 STPG1Q5TH74 334 aa14.71□□□□□ -0.05
CCDC40-208ENST00000572270 PSAPL1Q6NUJ1 521 aa14.71□□□□□ -0.05
CCDC40-208ENST00000572270 AGMOQ6ZNB7 445 aa14.71□□□□□ -0.05
CCDC40-208ENST00000572270 RNF168Q8IYW5 571 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-208ENST00000572270 ZNF654Q8IZM8 581 aa14.71□□□□□ -0.05
CCDC40-208ENST00000572270 SRBD1Q8N5C6 995 aaKnown RBP14.71□□□□□ -0.05
CCDC40-208ENST00000572270 FNIP2Q9P278 1114 aa14.71□□□□□ -0.05
CCDC40-208ENST00000572270 PCDHA10Q9Y5I2 948 aa14.71□□□□□ -0.05
CCDC40-208ENST00000572270 SETXQ7Z333 2677 aaKnown RBP14.7□□□□□ -0.06
CCDC40-208ENST00000572270 A0A087WZ62 844 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 CHURC1-FNTBB4DL54 471 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 DHX15O43143 795 aaKnown RBP14.7□□□□□ -0.06
CCDC40-208ENST00000572270 HRO43593 1189 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 XYLBO75191 536 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 HNRNPA1P09651 372 aaKnown RBP eCLIP14.7□□□□□ -0.06
CCDC40-208ENST00000572270 CXCL12P48061 93 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 FNTBP49356 437 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 FOXC1Q12948 553 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 PPM1LQ5SGD2 360 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 LILRA6Q6PI73 481 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 LONP2Q86WA8 852 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 CMTR1Q8N1G2 835 aaKnown RBP14.7□□□□□ -0.06
CCDC40-208ENST00000572270 FAM160A2Q8N612 972 aaPredicted RBP14.7□□□□□ -0.06
CCDC40-208ENST00000572270 DNASE1L2Q92874 299 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 FDXACB1Q9BRP7 624 aaPredicted RBP14.7□□□□□ -0.06
CCDC40-208ENST00000572270 ZNF577Q9BSK1 485 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 LSM14BQ9BX40 385 aaKnown RBP14.7□□□□□ -0.06
CCDC40-208ENST00000572270 ADAM33Q9BZ11 813 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 TBC1D22BQ9NU19 505 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 PCDHB15Q9Y5E8 787 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 WDFY3Q8IZQ1 3526 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 WDR81Q562E7 1941 aa14.7□□□□□ -0.06
CCDC40-208ENST00000572270 hCG_1642624A0A1W2PR95 340 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 ECI2O75521 394 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 SREBF1P36956 1147 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 DNM2P50570 870 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 AFF1P51825 1210 aaKnown RBP14.69□□□□□ -0.06
CCDC40-208ENST00000572270 SATB1Q01826 763 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 PRKCEQ02156 737 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 SRSF5Q13243 272 aaKnown RBP14.69□□□□□ -0.06
CCDC40-208ENST00000572270 USP41Q3LFD5 358 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 ZNF410Q86VK4 478 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 COLGALT2Q8IYK4 626 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 GPR65Q8IYL9 337 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 NCOA7Q8NI08 942 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 ITFG1Q8TB96 612 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 MBOAT7Q96N66 472 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 LMAN1LQ9HAT1 526 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 CHST7Q9NS84 486 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 FBXW11Q9UKB1 542 aa14.69□□□□□ -0.06
CCDC40-208ENST00000572270 U3KPZ7 1027 aaPredicted RBP14.69□□□□□ -0.06
CCDC40-208ENST00000572270 CCL16O15467 120 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 C8AP07357 584 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 ZNF806P0C7X5 589 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 RPL17P18621 184 aaKnown RBP14.68□□□□□ -0.06
CCDC40-208ENST00000572270 HOXA9P31269 272 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 NAPAP54920 295 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 SETQ01105 290 aaPredicted RBP14.68□□□□□ -0.06
CCDC40-208ENST00000572270 TEX2Q8IWB9 1127 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 NPAS3Q8IXF0 933 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 ZCCHC14Q8WYQ9 949 aaKnown RBP14.68□□□□□ -0.06
CCDC40-208ENST00000572270 FAM3CQ92520 227 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 B3GALT6Q96L58 329 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 COLEC11Q9BWP8 271 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 ARRDC1-AS1Q9H2J1 176 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 UBN1Q9NPG3 1134 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 RIC8AQ9NPQ8 531 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 AGPAT5Q9NUQ2 364 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 KCNH3Q9ULD8 1083 aa14.68□□□□□ -0.06
CCDC40-208ENST00000572270 TDRD15B5MCY1 1934 aaKnown RBP14.68□□□□□ -0.06
CCDC40-208ENST00000572270 WDR64B1ANS9 1081 aa14.67□□□□□ -0.06
CCDC40-208ENST00000572270 FAM86B1E9PN63 330 aa14.67□□□□□ -0.06
CCDC40-208ENST00000572270 AXIN1O15169 862 aa14.67□□□□□ -0.06
CCDC40-208ENST00000572270 EFEMP2O95967 443 aa14.67□□□□□ -0.06
CCDC40-208ENST00000572270 FAM86B2P0C5J1 330 aa14.67□□□□□ -0.06
CCDC40-208ENST00000572270 RBM25P49756 843 aaKnown RBP14.67□□□□□ -0.06
CCDC40-208ENST00000572270 NOVA1P51513 510 aaKnown RBP14.67□□□□□ -0.06
CCDC40-208ENST00000572270 ADCY7P51828 1080 aa14.67□□□□□ -0.06
CCDC40-208ENST00000572270 ZNF252P-AS1Q0IIN9 211 aa14.67□□□□□ -0.06
CCDC40-208ENST00000572270 AP3B2Q13367 1082 aa14.67□□□□□ -0.06
CCDC40-208ENST00000572270 DRP2Q13474 957 aa14.67□□□□□ -0.06
CCDC40-208ENST00000572270 CCDC6Q16204 474 aa14.67□□□□□ -0.06
CCDC40-208ENST00000572270 PABPC1LQ4VXU2 614 aaKnown RBP14.67□□□□□ -0.06
CCDC40-208ENST00000572270 HEATR6Q6AI08 1181 aaKnown RBP14.67□□□□□ -0.06
CCDC40-208ENST00000572270 FUT10Q6P4F1 479 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms