RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 C1QTNF9P0C862 333 aa20.38■□□□□ 0.85
CLK3-227ENST00000570296 CCR3P51677 355 aa20.38■□□□□ 0.85
CLK3-227ENST00000570296 GRASPQ7Z6J2 395 aaPredicted RBP20.38■□□□□ 0.85
CLK3-227ENST00000570296 PLA2G4DQ86XP0 818 aa20.38■□□□□ 0.85
CLK3-227ENST00000570296 MAP4K1Q92918 833 aa20.38■□□□□ 0.85
CLK3-227ENST00000570296 PGBD1Q96JS3 809 aa20.38■□□□□ 0.85
CLK3-227ENST00000570296 KXD1Q9BQD3 176 aa20.38■□□□□ 0.85
CLK3-227ENST00000570296 RSAD1Q9HA92 442 aa20.38■□□□□ 0.85
CLK3-227ENST00000570296 CHST7Q9NS84 486 aa20.38■□□□□ 0.85
CLK3-227ENST00000570296 NRBP2Q9NSY0 501 aa20.38■□□□□ 0.85
CLK3-227ENST00000570296 TCEAL9Q9UHQ7 104 aa20.38■□□□□ 0.85
CLK3-227ENST00000570296 PRG3Q9Y2Y8 225 aaPredicted RBP20.38■□□□□ 0.85
CLK3-227ENST00000570296 PCDHB2Q9Y5E7 798 aa20.38■□□□□ 0.85
CLK3-227ENST00000570296 TMEM8BA6NDV4 472 aa20.37■□□□□ 0.85
CLK3-227ENST00000570296 OATP04181 439 aa20.37■□□□□ 0.85
CLK3-227ENST00000570296 HNRNPA1P09651 372 aaKnown RBP eCLIP20.37■□□□□ 0.85
CLK3-227ENST00000570296 CNR2P34972 360 aa20.37■□□□□ 0.85
CLK3-227ENST00000570296 CREMQ03060 361 aa20.37■□□□□ 0.85
CLK3-227ENST00000570296 AASDHQ4L235 1098 aaPredicted RBP20.37■□□□□ 0.85
CLK3-227ENST00000570296 HEATR3Q7Z4Q2 680 aa20.37■□□□□ 0.85
CLK3-227ENST00000570296 MRPL10Q7Z7H8 261 aaKnown RBP20.37■□□□□ 0.85
CLK3-227ENST00000570296 ZNF687Q8N1G0 1237 aa20.37■□□□□ 0.85
CLK3-227ENST00000570296 NCOA7Q8NI08 942 aa20.37■□□□□ 0.85
CLK3-227ENST00000570296 MBOAT7Q96N66 472 aa20.37■□□□□ 0.85
CLK3-227ENST00000570296 U3KPZ7 1027 aaPredicted RBP20.37■□□□□ 0.85
CLK3-227ENST00000570296 AFF1P51825 1210 aaKnown RBP20.36■□□□□ 0.85
CLK3-227ENST00000570296 RIC8AQ9NPQ8 531 aa20.36■□□□□ 0.85
CLK3-227ENST00000570296 SPAG17Q6Q759 2223 aa20.36■□□□□ 0.85
CLK3-227ENST00000570296 SDK1Q7Z5N4 2213 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 A0A087WZ62 844 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 hCG_1642624A0A1W2PR95 340 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 SHISA7A6NL88 538 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 FAM86B1E9PN63 330 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 MAN2B1O00754 1011 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 POMCP01189 267 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 CYP21A2P08686 494 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 FAM86B2P0C5J1 330 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 OR1G1P47890 313 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 ANTXR2P58335 489 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 AP3B2Q13367 1082 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 LRSAM1Q6UWE0 723 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 CATSPER4Q7RTX7 472 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 ZNF410Q86VK4 478 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 COLGALT2Q8IYK4 626 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 CMTR1Q8N1G2 835 aaKnown RBP20.35■□□□□ 0.85
CLK3-227ENST00000570296 DNASE1L2Q92874 299 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 FDXACB1Q9BRP7 624 aaPredicted RBP20.35■□□□□ 0.85
CLK3-227ENST00000570296 ZNF577Q9BSK1 485 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 HEBP1Q9NRV9 189 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 WDFY3Q8IZQ1 3526 aa20.35■□□□□ 0.85
CLK3-227ENST00000570296 TDRD15B5MCY1 1934 aaKnown RBP20.34■□□□□ 0.85
CLK3-227ENST00000570296 IGLV3-22A0A075B6J6 115 aa20.34■□□□□ 0.85
CLK3-227ENST00000570296 HRO43593 1189 aa20.34■□□□□ 0.85
CLK3-227ENST00000570296 ZNF862O60290 1169 aa20.34■□□□□ 0.85
CLK3-227ENST00000570296 ECI2O75521 394 aa20.34■□□□□ 0.85
CLK3-227ENST00000570296 KCNK5O95279 499 aa20.34■□□□□ 0.85
CLK3-227ENST00000570296 NTHL1P78549 312 aa20.34■□□□□ 0.85
CLK3-227ENST00000570296 PPP1R18Q6NYC8 613 aa20.34■□□□□ 0.85
CLK3-227ENST00000570296 ASH1LQ9NR48 2969 aaKnown RBP20.34■□□□□ 0.85
CLK3-227ENST00000570296 FBXW11Q9UKB1 542 aa20.34■□□□□ 0.85
CLK3-227ENST00000570296 NOTCH4Q99466 2003 aa20.34■□□□□ 0.85
CLK3-227ENST00000570296 ITPR1Q14643 2758 aa20.34■□□□□ 0.85
CLK3-227ENST00000570296 HOXA9P31269 272 aa20.33■□□□□ 0.85
CLK3-227ENST00000570296 SETQ01105 290 aaPredicted RBP20.33■□□□□ 0.85
CLK3-227ENST00000570296 PRKCEQ02156 737 aa20.33■□□□□ 0.85
CLK3-227ENST00000570296 DRP2Q13474 957 aa20.33■□□□□ 0.85
CLK3-227ENST00000570296 USP41Q3LFD5 358 aa20.33■□□□□ 0.85
CLK3-227ENST00000570296 LIN9Q5TKA1 542 aa20.33■□□□□ 0.85
CLK3-227ENST00000570296 GLYCTKQ8IVS8 523 aa20.33■□□□□ 0.85
CLK3-227ENST00000570296 ITFG1Q8TB96 612 aa20.33■□□□□ 0.85
CLK3-227ENST00000570296 UBN1Q9NPG3 1134 aa20.33■□□□□ 0.85
CLK3-227ENST00000570296 AGPAT5Q9NUQ2 364 aa20.33■□□□□ 0.85
CLK3-227ENST00000570296 KCNH3Q9ULD8 1083 aa20.33■□□□□ 0.85
CLK3-227ENST00000570296 SAMM50Q9Y512 469 aa20.33■□□□□ 0.85
CLK3-227ENST00000570296 AKAP13Q12802 2813 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 WDR64B1ANS9 1081 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 E7EWF7 191 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 XYLBO75191 536 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 NR1I2O75469 434 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 POU2F2P09086 479 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 CXCL12P48061 93 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 DNM2P50570 870 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 ADCY7P51828 1080 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 DSC1Q08554 894 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 TARBP2Q15633 366 aaKnown RBP20.32■□□□□ 0.84
CLK3-227ENST00000570296 WWC2Q6AWC2 1192 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 NPAS3Q8IXF0 933 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 C12orf50Q8NA57 414 aaPredicted RBP20.32■□□□□ 0.84
CLK3-227ENST00000570296 LSM14BQ9BX40 385 aaKnown RBP20.32■□□□□ 0.84
CLK3-227ENST00000570296 NDRG2Q9UN36 371 aaKnown RBP20.32■□□□□ 0.84
CLK3-227ENST00000570296 DMXL2Q8TDJ6 3036 aa20.32■□□□□ 0.84
CLK3-227ENST00000570296 CALM1P0DP23 149 aa20.31■□□□□ 0.84
CLK3-227ENST00000570296 CALM2P0DP24 149 aa20.31■□□□□ 0.84
CLK3-227ENST00000570296 CALM3P0DP25 149 aa20.31■□□□□ 0.84
CLK3-227ENST00000570296 NAPAP54920 295 aa20.31■□□□□ 0.84
CLK3-227ENST00000570296 PPM1LQ5SGD2 360 aa20.31■□□□□ 0.84
CLK3-227ENST00000570296 STPG1Q5TH74 334 aa20.31■□□□□ 0.84
CLK3-227ENST00000570296 MB21D2Q8IYB1 491 aaPredicted RBP20.31■□□□□ 0.84
CLK3-227ENST00000570296 FAM160A2Q8N612 972 aaPredicted RBP20.31■□□□□ 0.84
CLK3-227ENST00000570296 B3GALT6Q96L58 329 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms