RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 LONRF3Q496Y0 759 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 SLC27A1Q6PCB7 646 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 LRRC43Q8N309 656 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 FBXO22Q8NEZ5 403 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 DNAJC19Q96DA6 116 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 NXF3Q9H4D5 531 aaKnown RBP10.8□□□□□ -0.68
CLK3-220ENST00000567992 TMEM134Q9H6X4 195 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 PTPRHQ9HD43 1115 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 KMT5AQ9NQR1 393 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 TYW1Q9NV66 732 aaKnown RBP10.8□□□□□ -0.68
CLK3-220ENST00000567992 HES2Q9Y543 173 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 MTCH2Q9Y6C9 303 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 TDRD15B5MCY1 1934 aaKnown RBP10.8□□□□□ -0.68
CLK3-220ENST00000567992 FRMD3A2A2Y4 597 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 N4BP3O15049 544 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 NPTXRO95502 500 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 LIG1P18858 919 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 PROZP22891 400 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 NUCB2P80303 420 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 SV2BQ7L1I2 683 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 CNNM3Q8NE01 707 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 GSTCDQ8NEC7 633 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 DDX12PQ92771 950 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 SPATA32Q96LK8 384 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 GAS2L1Q99501 681 aaPredicted RBP10.79□□□□□ -0.68
CLK3-220ENST00000567992 ACO2Q99798 780 aaKnown RBP10.79□□□□□ -0.68
CLK3-220ENST00000567992 PLVAPQ9BX97 442 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 RSAD1Q9HA92 442 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 PARVGQ9HBI0 331 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 TBC1D13Q9NVG8 400 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 KBTBD4Q9NVX7 518 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 HPSEQ9Y251 543 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 RWDD3Q9Y3V2 267 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 ATP6V1DQ9Y5K8 247 aa10.79□□□□□ -0.68
CLK3-220ENST00000567992 PDCD11Q14690 1871 aaKnown RBP10.78□□□□□ -0.68
CLK3-220ENST00000567992 ZMYM2Q9UBW7 1377 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 FAM237AA0A1B0GTK4 181 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 K7ERI5 159 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 GRM6O15303 877 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 TBCAO75347 108 aaKnown RBP10.78□□□□□ -0.68
CLK3-220ENST00000567992 FAM13AO94988 1023 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 KRT18P05783 430 aaKnown RBP10.78□□□□□ -0.68
CLK3-220ENST00000567992 RB1P06400 928 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 NCBP1Q09161 790 aaKnown RBP10.78□□□□□ -0.68
CLK3-220ENST00000567992 GPM6BQ13491 265 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 CAMK1Q14012 370 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 ATF7IP2Q5U623 682 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 ADALQ6DHV7 355 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 GLB1LQ6UWU2 654 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 DYMQ7RTS9 669 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 ABI1Q8IZP0 508 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 MYCT1Q8N699 235 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 COLGALT1Q8NBJ5 622 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 RSPH1Q8WYR4 309 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 STAMQ92783 540 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 P2RX5Q93086 422 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 DHX58Q96C10 678 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 PGBD4Q96DM1 585 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 TARS2Q9BW92 718 aaKnown RBP10.78□□□□□ -0.68
CLK3-220ENST00000567992 MRPL9Q9BYD2 267 aaKnown RBP10.78□□□□□ -0.68
CLK3-220ENST00000567992 SCAND2PQ9GZW5 306 aaPredicted RBP10.78□□□□□ -0.68
CLK3-220ENST00000567992 CXCL16Q9H2A7 254 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 TNMDQ9H2S6 317 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 CUEDC2Q9H467 287 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 GDPD2Q9HCC8 539 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 LARSQ9P2J5 1176 aaKnown RBP10.78□□□□□ -0.68
CLK3-220ENST00000567992 TNFSF13BQ9Y275 285 aa10.78□□□□□ -0.68
CLK3-220ENST00000567992 TRIP11Q15643 1979 aa10.77□□□□□ -0.68
CLK3-220ENST00000567992 ARL5CA6NH57 179 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 K7ENM7 598 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 POLR2DO15514 142 aaKnown RBP10.77□□□□□ -0.69
CLK3-220ENST00000567992 ACTN4O43707 911 aaKnown RBP10.77□□□□□ -0.69
CLK3-220ENST00000567992 TRAK2O60296 914 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 PPP1R37O75864 691 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 ITGB1P05556 798 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 ITGA4P13612 1032 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 PFKFB1P16118 471 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 LAG3P18627 525 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 IGFBP4P22692 258 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 CMA1P23946 247 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 AKAP5P24588 427 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 DNAJB1P25685 340 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 NMT1P30419 496 aaKnown RBP10.77□□□□□ -0.69
CLK3-220ENST00000567992 PBX3P40426 434 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 MLH1P40692 756 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 SMTNP53814 917 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 DCAF4L1Q3SXM0 396 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 NOMO2Q5JPE7 1267 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 CNNM4Q6P4Q7 775 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 HAUS6Q7Z4H7 955 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 TMEM173Q86WV6 379 aaPredicted RBP10.77□□□□□ -0.69
CLK3-220ENST00000567992 SFR1Q86XK3 245 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 ZNF280BQ86YH2 543 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 IQUBQ8NA54 791 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 KLHL23Q8NBE8 558 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 MAFAQ8NHW3 353 aaPredicted RBP10.77□□□□□ -0.69
CLK3-220ENST00000567992 ZFP42Q96MM3 310 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 GAD1Q99259 594 aa10.77□□□□□ -0.69
CLK3-220ENST00000567992 C11orf84Q9BUA3 381 aaPredicted RBP10.77□□□□□ -0.69
CLK3-220ENST00000567992 APOL6Q9BWW8 343 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms