RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PTPN21Q16825 1174 aa17.87■□□□□ 0.45
CLN3-229ENST00000567963 C12orf76Q8N812 135 aaPredicted RBP17.87■□□□□ 0.45
CLN3-229ENST00000567963 CCDC43Q96MW1 224 aaKnown RBP17.87■□□□□ 0.45
CLN3-229ENST00000567963 DZANK1Q9NVP4 752 aa17.87■□□□□ 0.45
CLN3-229ENST00000567963 LIMCH1Q9UPQ0 1083 aa17.87■□□□□ 0.45
CLN3-229ENST00000567963 ARL5CA6NH57 179 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 LILRB3O75022 631 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 ARF4P18085 180 aaPredicted RBP17.86■□□□□ 0.45
CLN3-229ENST00000567963 ATP2B1P20020 1258 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 MTHFRP42898 656 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 GUCY1B3Q02153 619 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 SAFBQ15424 915 aaKnown RBP eCLIP17.86■□□□□ 0.45
CLN3-229ENST00000567963 RARS2Q5T160 578 aaKnown RBP17.86■□□□□ 0.45
CLN3-229ENST00000567963 KANK3Q6NY19 840 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 PPFIBP1Q86W92 1011 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 CATSPER3Q86XQ3 398 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 COLGALT2Q8IYK4 626 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 RIPOR3Q96MK2 946 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 GAD1Q99259 594 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 TSHZ2Q9NRE2 1034 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 HES2Q9Y543 173 aa17.86■□□□□ 0.45
CLN3-229ENST00000567963 SSBP05455 408 aaKnown RBP eCLIP17.85■□□□□ 0.45
CLN3-229ENST00000567963 WEE2P0C1S8 567 aa17.85■□□□□ 0.45
CLN3-229ENST00000567963 ATAT1Q5SQI0 421 aa17.85■□□□□ 0.45
CLN3-229ENST00000567963 ASIC4Q96FT7 647 aa17.85■□□□□ 0.45
CLN3-229ENST00000567963 KLHL5Q96PQ7 755 aa17.85■□□□□ 0.45
CLN3-229ENST00000567963 LLPHQ9BRT6 129 aaKnown RBP17.85■□□□□ 0.45
CLN3-229ENST00000567963 EMILIN2Q9BXX0 1053 aa17.85■□□□□ 0.45
CLN3-229ENST00000567963 POLR3FQ9H1D9 316 aaPredicted RBP17.85■□□□□ 0.45
CLN3-229ENST00000567963 TUFT1Q9NNX1 390 aa17.85■□□□□ 0.45
CLN3-229ENST00000567963 MIOSQ9NXC5 875 aa17.85■□□□□ 0.45
CLN3-229ENST00000567963 C2CD4DB7Z1M9 353 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 B4GALT5O43286 388 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 USO1O60763 962 aaKnown RBP17.84■□□□□ 0.45
CLN3-229ENST00000567963 SOD2P04179 222 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 CNPP09543 421 aaKnown RBP17.84■□□□□ 0.45
CLN3-229ENST00000567963 KLRC2P26717 231 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 MLH1P40692 756 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 CLCN4P51793 760 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 NHLH1Q02575 133 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 DSC1Q08554 894 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 KIAA1841Q6NSI8 718 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 CABP7Q86V35 215 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 CCDC83Q8IWF9 413 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 C8orf76Q96K31 380 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 ZFP42Q96MM3 310 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 TRIM6Q9C030 488 aaPredicted RBP17.84■□□□□ 0.45
CLN3-229ENST00000567963 MRPL17Q9NRX2 175 aaKnown RBP17.84■□□□□ 0.45
CLN3-229ENST00000567963 MARCH5Q9NX47 278 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 GIT1Q9Y2X7 761 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 MYO10Q9HD67 2058 aa17.84■□□□□ 0.45
CLN3-229ENST00000567963 TDRD15B5MCY1 1934 aaKnown RBP17.83■□□□□ 0.45
CLN3-229ENST00000567963 A0A1B0GUA9 196 aa17.83■□□□□ 0.45
CLN3-229ENST00000567963 MED24O75448 989 aa17.83■□□□□ 0.45
CLN3-229ENST00000567963 OR1G1P47890 313 aa17.83■□□□□ 0.45
CLN3-229ENST00000567963 SLC27A1Q6PCB7 646 aa17.83■□□□□ 0.45
CLN3-229ENST00000567963 MAEAQ7L5Y9 396 aa17.83■□□□□ 0.45
CLN3-229ENST00000567963 TAS1R1Q7RTX1 841 aa17.83■□□□□ 0.45
CLN3-229ENST00000567963 ZBTB33Q86T24 672 aa17.83■□□□□ 0.45
CLN3-229ENST00000567963 FBXL6Q8N531 539 aa17.83■□□□□ 0.45
CLN3-229ENST00000567963 NACC1Q96RE7 527 aa17.83■□□□□ 0.45
CLN3-229ENST00000567963 POLR3CQ9BUI4 534 aaPredicted RBP17.83■□□□□ 0.45
CLN3-229ENST00000567963 FOXP1Q9H334 677 aaPredicted RBP17.83■□□□□ 0.45
CLN3-229ENST00000567963 NXF3Q9H4D5 531 aaKnown RBP17.83■□□□□ 0.45
CLN3-229ENST00000567963 GPRC5CQ9NQ84 441 aa17.83■□□□□ 0.45
CLN3-229ENST00000567963 DBR1Q9UK59 544 aaKnown RBP17.83■□□□□ 0.45
CLN3-229ENST00000567963 PRG3Q9Y2Y8 225 aaPredicted RBP17.83■□□□□ 0.45
CLN3-229ENST00000567963 EFEMP2O95967 443 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 SCNN1GP51170 649 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 ORC2Q13416 577 aaPredicted RBP17.82■□□□□ 0.44
CLN3-229ENST00000567963 ZNF174Q15697 407 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 IER5LQ5T953 404 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 TMC5Q6UXY8 1006 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 ALYREFQ86V81 257 aaKnown RBP17.82■□□□□ 0.44
CLN3-229ENST00000567963 CDR2LQ86X02 465 aaPredicted RBP17.82■□□□□ 0.44
CLN3-229ENST00000567963 SUGP1Q8IWZ8 645 aaKnown RBP17.82■□□□□ 0.44
CLN3-229ENST00000567963 HACE1Q8IYU2 909 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 RNF168Q8IYW5 571 aaPredicted RBP17.82■□□□□ 0.44
CLN3-229ENST00000567963 GSTCDQ8NEC7 633 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 MCPH1Q8NEM0 835 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 FBXO18Q8NFZ0 1043 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 FEZF2Q8TBJ5 459 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 APOL6Q9BWW8 343 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 SFXN1Q9H9B4 322 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 SSX2IPQ9Y2D8 614 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 LRRIQ4A6NIV6 560 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 C2CD2LO14523 706 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 OR52Z1P0C646 297 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 AKAP5P24588 427 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 RPA1P27694 616 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 GPR149Q86SP6 731 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 KREMEN2Q8NCW0 462 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 PRIMPOLQ96LW4 560 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 RPS6KC1Q96S38 1066 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 HERC2P3Q9BVR0 1158 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 SORCS3Q9UPU3 1222 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 USTQ9Y2C2 406 aa17.82■□□□□ 0.44
CLN3-229ENST00000567963 NR1I2O75469 434 aa17.81■□□□□ 0.44
CLN3-229ENST00000567963 NPTXRO95502 500 aa17.81■□□□□ 0.44
CLN3-229ENST00000567963 URODP06132 367 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms