RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 GUCY2CP25092 1073 aa20.65■□□□□ 0.9
CLN3-227ENST00000567495 LONP1P36776 959 aaKnown RBP20.65■□□□□ 0.9
CLN3-227ENST00000567495 UBA7P41226 1012 aa20.65■□□□□ 0.9
CLN3-227ENST00000567495 DMP1Q13316 513 aaPredicted RBP20.65■□□□□ 0.9
CLN3-227ENST00000567495 ZRSR1Q15695 479 aaKnown RBP20.65■□□□□ 0.9
CLN3-227ENST00000567495 TMEM132AQ24JP5 1023 aa20.65■□□□□ 0.9
CLN3-227ENST00000567495 C1orf186Q6ZWK4 172 aa20.65■□□□□ 0.9
CLN3-227ENST00000567495 TMC7Q7Z402 723 aa20.65■□□□□ 0.9
CLN3-227ENST00000567495 APBB1IPQ7Z5R6 666 aaPredicted RBP20.65■□□□□ 0.9
CLN3-227ENST00000567495 ADGRD2Q7Z7M1 963 aa20.65■□□□□ 0.9
CLN3-227ENST00000567495 DDX53Q86TM3 631 aaKnown RBP20.65■□□□□ 0.9
CLN3-227ENST00000567495 IGSF21Q96ID5 467 aa20.65■□□□□ 0.9
CLN3-227ENST00000567495 RBM19Q9Y4C8 960 aaKnown RBP20.65■□□□□ 0.9
CLN3-227ENST00000567495 ARL5CA6NH57 179 aa20.64■□□□□ 0.89
CLN3-227ENST00000567495 SRGAP2BP0DMP2 458 aa20.64■□□□□ 0.89
CLN3-227ENST00000567495 PDIA4P13667 645 aaKnown RBP20.64■□□□□ 0.89
CLN3-227ENST00000567495 NDUFV1P49821 464 aa20.64■□□□□ 0.89
CLN3-227ENST00000567495 GIT2Q14161 759 aa20.64■□□□□ 0.89
CLN3-227ENST00000567495 SMC1AQ14683 1233 aaKnown RBP20.64■□□□□ 0.89
CLN3-227ENST00000567495 SF3A1Q15459 793 aaKnown RBP20.64■□□□□ 0.89
CLN3-227ENST00000567495 RINT1Q6NUQ1 792 aa20.64■□□□□ 0.89
CLN3-227ENST00000567495 RBM23Q86U06 439 aaKnown RBP20.64■□□□□ 0.89
CLN3-227ENST00000567495 CABP7Q86V35 215 aa20.64■□□□□ 0.89
CLN3-227ENST00000567495 MRPL43Q8N983 215 aaKnown RBP20.64■□□□□ 0.89
CLN3-227ENST00000567495 SYT2Q8N9I0 419 aaPredicted RBP20.64■□□□□ 0.89
CLN3-227ENST00000567495 CALML4Q96GE6 196 aa20.64■□□□□ 0.89
CLN3-227ENST00000567495 GAD1Q99259 594 aa20.64■□□□□ 0.89
CLN3-227ENST00000567495 ADPGKQ9BRR6 497 aa20.64■□□□□ 0.89
CLN3-227ENST00000567495 CCDC113Q9H0I3 377 aa20.64■□□□□ 0.89
CLN3-227ENST00000567495 SPTBN5Q9NRC6 3674 aaKnown RBP20.64■□□□□ 0.89
CLN3-227ENST00000567495 K7ERI5 159 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 NR1I2O75469 434 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 NPTXRO95502 500 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 GTF2F1P35269 517 aaKnown RBP eCLIP20.63■□□□□ 0.89
CLN3-227ENST00000567495 DUSP6Q16828 381 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 TMEM119Q4V9L6 283 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 PLPP4Q5VZY2 271 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 KCNK18Q7Z418 384 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 ZNF280BQ86YH2 543 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 PNMA5Q96PV4 448 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 RUSC1Q9BVN2 902 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 GBP3Q9H0R5 595 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 RNF39Q9H2S5 420 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 NXF3Q9H4D5 531 aaKnown RBP20.63■□□□□ 0.89
CLN3-227ENST00000567495 ZSCAN16Q9H4T2 348 aaPredicted RBP20.63■□□□□ 0.89
CLN3-227ENST00000567495 CD207Q9UJ71 328 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 HES2Q9Y543 173 aa20.63■□□□□ 0.89
CLN3-227ENST00000567495 CCDC169A6NNP5 214 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 NT5C1B-RDH14C9J2C7 533 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 HIP1RO75146 1068 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 POMCP01189 267 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 MLH1P40692 756 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 NPTX2P47972 431 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 SLC11A1P49279 550 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 SMAD4Q13485 552 aaKnown RBP20.62■□□□□ 0.89
CLN3-227ENST00000567495 HSCBQ8IWL3 235 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 VPS52Q8N1B4 723 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 NECAB3Q96P71 396 aaPredicted RBP20.62■□□□□ 0.89
CLN3-227ENST00000567495 NTPCRQ9BSD7 190 aaKnown RBP20.62■□□□□ 0.89
CLN3-227ENST00000567495 PDZD7Q9H5P4 517 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 TMEM134Q9H6X4 195 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 DNAJB4Q9UDY4 337 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 PRKAG3Q9UGI9 489 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 FAN1Q9Y2M0 1017 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 PCDHGC5Q9Y5F6 944 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 IRAK3Q9Y616 596 aa20.62■□□□□ 0.89
CLN3-227ENST00000567495 TBX10O75333 385 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 DDHD2O94830 711 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 SSBP05455 408 aaKnown RBP eCLIP20.61■□□□□ 0.89
CLN3-227ENST00000567495 PLA2G4BP0C869 781 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 LIG1P18858 919 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 AFF1P51825 1210 aaKnown RBP20.61■□□□□ 0.89
CLN3-227ENST00000567495 SMTNP53814 917 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 PEX3P56589 373 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 DLX2Q07687 328 aaPredicted RBP20.61■□□□□ 0.89
CLN3-227ENST00000567495 COASYQ13057 564 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 RESTQ13127 1097 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 DCAF4L1Q3SXM0 396 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 TMEM184AQ6ZMB5 413 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 FAM178BQ8IXR5 827 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 DAW1Q8N136 415 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 SPIRE2Q8WWL2 714 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 MSLNLQ96KJ4 702 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 KIFC3Q9BVG8 833 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 APOL6Q9BWW8 343 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 KMT5AQ9NQR1 393 aa20.61■□□□□ 0.89
CLN3-227ENST00000567495 C2orf71A6NGG8 1288 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 PER2O15055 1255 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 LINC01565O15544 149 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 STX6O43752 255 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 CXCL14O95715 111 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 CTSAP10619 480 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 SLC12A3P55017 1021 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 DSC1Q08554 894 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 MAPK7Q13164 816 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 TMEM173Q86WV6 379 aaPredicted RBP20.6■□□□□ 0.89
CLN3-227ENST00000567495 CDR2LQ86X02 465 aaPredicted RBP20.6■□□□□ 0.89
CLN3-227ENST00000567495 COLGALT2Q8IYK4 626 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 TMEM87AQ8NBN3 555 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 RASSF8Q8NHQ8 419 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms