RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 KCTD17Q8N5Z5 321 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 REPS2Q8NFH8 660 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 SLC30A5Q8TAD4 765 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 PRDM16Q9HAZ2 1276 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 OLFML3Q9NRN5 406 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 ADAMTS5Q9UNA0 930 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 MRPL11Q9Y3B7 192 aaKnown RBP14.3□□□□□ -0.12
VPS4A-204ENST00000566354 CTDP1Q9Y5B0 961 aaPredicted RBP14.3□□□□□ -0.12
VPS4A-204ENST00000566354 GCNT3O95395 438 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 FOSP01100 380 aaPredicted RBP14.3□□□□□ -0.12
VPS4A-204ENST00000566354 PAEPP09466 180 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 NEFHP12036 1026 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 GAP43P17677 238 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 POU5F1Q01860 360 aaKnown RBP14.3□□□□□ -0.12
VPS4A-204ENST00000566354 DHX9Q08211 1270 aaKnown RBP14.3□□□□□ -0.12
VPS4A-204ENST00000566354 MKRN3Q13064 507 aaKnown RBP14.3□□□□□ -0.12
VPS4A-204ENST00000566354 MOGSQ13724 837 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 CLEC4DQ8WXI8 215 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 LENG9Q96B70 501 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 BORCS6Q96GS4 357 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 ZNF214Q9UL59 606 aaPredicted RBP14.3□□□□□ -0.12
VPS4A-204ENST00000566354 RIPK3Q9Y572 518 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 PIK3CDO00329 1044 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 EVI5O60447 810 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 TMEM253P0C7T8 217 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 EIF3BP55884 814 aaKnown RBP14.29□□□□□ -0.12
VPS4A-204ENST00000566354 TMEM132BQ14DG7 1078 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 FMNL3Q8IVF7 1028 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 C2orf69Q8N8R5 385 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 PROCA1Q8NCQ7 364 aaPredicted RBP14.29□□□□□ -0.12
VPS4A-204ENST00000566354 NAP1L3Q99457 506 aaPredicted RBP14.29□□□□□ -0.12
VPS4A-204ENST00000566354 POLR3CQ9BUI4 534 aaPredicted RBP14.29□□□□□ -0.12
VPS4A-204ENST00000566354 STK33Q9BYT3 514 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 RAB17Q9H0T7 212 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 BHMT2Q9H2M3 363 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 NOVA2Q9UNW9 492 aaKnown RBP14.29□□□□□ -0.12
VPS4A-204ENST00000566354 PCDHB13Q9Y5F0 798 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 SPDYE3A6NKU9 549 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 CLIC2O15247 247 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 EYA4O95677 639 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 FGGP02679 453 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 SOX5P35711 763 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 PSMC2P35998 433 aaKnown RBP14.29□□□□□ -0.12
VPS4A-204ENST00000566354 SMTNP53814 917 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 FKBP1BP68106 108 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 CLUL1Q15846 466 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 NFIL3Q16649 462 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 LRCH2Q5VUJ6 765 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 GJB7Q6PEY0 223 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 EP400NLQ6ZTU2 488 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 SLC35G2Q8TBE7 412 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 RFFLQ8WZ73 363 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 ACTR5Q9H9F9 607 aaPredicted RBP14.29□□□□□ -0.12
VPS4A-204ENST00000566354 HOXC10Q9NYD6 342 aa14.29□□□□□ -0.12
VPS4A-204ENST00000566354 DDX20Q9UHI6 824 aaKnown RBP14.29□□□□□ -0.12
VPS4A-204ENST00000566354 NCANO14594 1321 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 RSPH10B2B2RC85 870 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 F8VZ95 297 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 EIF3DO15371 548 aaKnown RBP eCLIP14.28□□□□□ -0.12
VPS4A-204ENST00000566354 TGFB1I1O43294 461 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 BUB1BO60566 1050 aaPredicted RBP14.28□□□□□ -0.12
VPS4A-204ENST00000566354 PPFIA2O75334 1257 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 RSPH10BP0C881 870 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 POLR2MP0CAP2 368 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 FDX1P10109 184 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 SREBF1P36956 1147 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 CDR1P51861 262 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 SETDB1Q15047 1291 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 CCDC121Q6ZUS5 278 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 LNX1Q8TBB1 728 aaPredicted RBP14.28□□□□□ -0.12
VPS4A-204ENST00000566354 RUSC1Q9BVN2 902 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 CNOT10Q9H9A5 744 aaKnown RBP14.28□□□□□ -0.12
VPS4A-204ENST00000566354 RABGAP1Q9Y3P9 1069 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 TRPM7Q96QT4 1865 aa14.28□□□□□ -0.12
VPS4A-204ENST00000566354 FAM86B1E9PN63 330 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 FAM86B2P0C5J1 330 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 TMOD1P28289 359 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 CIITAP33076 1130 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 PTENP60484 403 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 MAGOHP61326 146 aaKnown RBP14.27□□□□□ -0.12
VPS4A-204ENST00000566354 KRT71Q3SY84 523 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 SNRNP48Q6IEG0 339 aaKnown RBP14.27□□□□□ -0.12
VPS4A-204ENST00000566354 GLYCTKQ8IVS8 523 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 CCDC13Q8IYE1 715 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 FAM186BQ8IYM0 893 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 CTNNBL1Q8WYA6 563 aaPredicted RBP14.27□□□□□ -0.12
VPS4A-204ENST00000566354 MAGOHBQ96A72 148 aaKnown RBP14.27□□□□□ -0.12
VPS4A-204ENST00000566354 FMO2Q99518 471 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 MKNK1Q9BUB5 465 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 CELF4Q9BZC1 486 aaKnown RBP14.27□□□□□ -0.12
VPS4A-204ENST00000566354 CARD9Q9H257 536 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 VAV3Q9UKW4 847 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 SUFUQ9UMX1 484 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 AGTPBP1Q9UPW5 1226 aa14.27□□□□□ -0.12
VPS4A-204ENST00000566354 C5orf60A6NFR6 353 aa14.27□□□□□ -0.13
VPS4A-204ENST00000566354 MSH4O15457 936 aa14.27□□□□□ -0.13
VPS4A-204ENST00000566354 KCNA1Q09470 495 aa14.27□□□□□ -0.13
VPS4A-204ENST00000566354 SNAPC2Q13487 334 aa14.27□□□□□ -0.13
VPS4A-204ENST00000566354 PLS1Q14651 629 aa14.27□□□□□ -0.13
VPS4A-204ENST00000566354 RAPGEF5Q92565 580 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms