RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 CHST7Q9NS84 486 aa18.8■□□□□ 0.6
CLK3-217ENST00000566126 NDRG2Q9UN36 371 aaKnown RBP18.8■□□□□ 0.6
CLK3-217ENST00000566126 PIN4Q9Y237 131 aaKnown RBP18.8■□□□□ 0.6
CLK3-217ENST00000566126 PCDHB15Q9Y5E8 787 aa18.8■□□□□ 0.6
CLK3-217ENST00000566126 F8W810 466 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 RAB27AP51159 221 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 SATB1Q01826 763 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 DRP2Q13474 957 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 PSAPL1Q6NUJ1 521 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 CATIPQ7Z7H3 387 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 SRBD1Q8N5C6 995 aaKnown RBP18.79■□□□□ 0.6
CLK3-217ENST00000566126 GATA6Q92908 595 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 MBOAT7Q96N66 472 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 FAM193BQ96PV7 902 aaPredicted RBP18.79■□□□□ 0.6
CLK3-217ENST00000566126 IER2Q9BTL4 223 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 ADAM33Q9BZ11 813 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 GCOM2Q9BZD3 368 aaPredicted RBP18.79■□□□□ 0.6
CLK3-217ENST00000566126 PLA2G2FQ9BZM2 168 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 COL4A2P08572 1712 aa18.79■□□□□ 0.6
CLK3-217ENST00000566126 SPAG17Q6Q759 2223 aa18.78■□□□□ 0.6
CLK3-217ENST00000566126 MAST4O15021 2626 aa18.78■□□□□ 0.6
CLK3-217ENST00000566126 HELZ2Q9BYK8 2649 aaKnown RBP18.78■□□□□ 0.6
CLK3-217ENST00000566126 PLEKHA8P1O95397 391 aa18.78■□□□□ 0.6
CLK3-217ENST00000566126 POMCP01189 267 aa18.78■□□□□ 0.6
CLK3-217ENST00000566126 RPL17P18621 184 aaKnown RBP18.78■□□□□ 0.6
CLK3-217ENST00000566126 CCDC6Q16204 474 aa18.78■□□□□ 0.6
CLK3-217ENST00000566126 COLGALT2Q8IYK4 626 aa18.78■□□□□ 0.6
CLK3-217ENST00000566126 PGBD4Q96DM1 585 aa18.78■□□□□ 0.6
CLK3-217ENST00000566126 RSAD1Q9HA92 442 aa18.78■□□□□ 0.6
CLK3-217ENST00000566126 IGSF10Q6WRI0 2623 aa18.78■□□□□ 0.6
CLK3-217ENST00000566126 hCG_1642624A0A1W2PR95 340 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 TOP3BO95985 862 aaKnown RBP18.77■□□□□ 0.6
CLK3-217ENST00000566126 ZNF806P0C7X5 589 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 CNR2P34972 360 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 CXCL12P48061 93 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 FOXC1Q12948 553 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 GAS6Q14393 721 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 ANKRD45Q5TZF3 282 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 MRPL10Q7Z7H8 261 aaKnown RBP18.77■□□□□ 0.6
CLK3-217ENST00000566126 NPAS3Q8IXF0 933 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 CMTR1Q8N1G2 835 aaKnown RBP18.77■□□□□ 0.6
CLK3-217ENST00000566126 C12orf50Q8NA57 414 aaPredicted RBP18.77■□□□□ 0.6
CLK3-217ENST00000566126 MAP3K14Q99558 947 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 FNIP2Q9P278 1114 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 KANSL3Q9P2N6 904 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 GABBR1Q9UBS5 961 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 PCDHB2Q9Y5E7 798 aa18.77■□□□□ 0.6
CLK3-217ENST00000566126 A0A087WZ62 844 aa18.76■□□□□ 0.59
CLK3-217ENST00000566126 ERICH2A1L162 156 aa18.76■□□□□ 0.59
CLK3-217ENST00000566126 GIPC1O14908 333 aa18.76■□□□□ 0.59
CLK3-217ENST00000566126 ECI2O75521 394 aa18.76■□□□□ 0.59
CLK3-217ENST00000566126 SFPQP23246 707 aaKnown RBP eCLIP18.76■□□□□ 0.59
CLK3-217ENST00000566126 OR1G1P47890 313 aa18.76■□□□□ 0.59
CLK3-217ENST00000566126 CTCFLQ8NI51 663 aaPredicted RBP18.76■□□□□ 0.59
CLK3-217ENST00000566126 FDXACB1Q9BRP7 624 aaPredicted RBP18.76■□□□□ 0.59
CLK3-217ENST00000566126 ARRDC1-AS1Q9H2J1 176 aa18.76■□□□□ 0.59
CLK3-217ENST00000566126 LMAN1LQ9HAT1 526 aa18.76■□□□□ 0.59
CLK3-217ENST00000566126 FBXW11Q9UKB1 542 aa18.76■□□□□ 0.59
CLK3-217ENST00000566126 TDRD15B5MCY1 1934 aaKnown RBP18.75■□□□□ 0.59
CLK3-217ENST00000566126 ZNF862O60290 1169 aa18.75■□□□□ 0.59
CLK3-217ENST00000566126 POTEHQ6S545 545 aa18.75■□□□□ 0.59
CLK3-217ENST00000566126 NIPA1Q7RTP0 329 aa18.75■□□□□ 0.59
CLK3-217ENST00000566126 LONP2Q86WA8 852 aa18.75■□□□□ 0.59
CLK3-217ENST00000566126 ZCCHC14Q8WYQ9 949 aaKnown RBP18.75■□□□□ 0.59
CLK3-217ENST00000566126 FAM167AQ96KS9 214 aa18.75■□□□□ 0.59
CLK3-217ENST00000566126 ANO3Q9BYT9 981 aa18.75■□□□□ 0.59
CLK3-217ENST00000566126 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.75■□□□□ 0.59
CLK3-217ENST00000566126 ADAMTS20P59510 1910 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 FAM86B1E9PN63 330 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 K7ESF4 209 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 IPO5O00410 1097 aaKnown RBP18.74■□□□□ 0.59
CLK3-217ENST00000566126 MAN2B1O00754 1011 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 AXIN1O15169 862 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 CCL16O15467 120 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 HNRNPA1P09651 372 aaKnown RBP eCLIP18.74■□□□□ 0.59
CLK3-217ENST00000566126 FAM86B2P0C5J1 330 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 TRDNQ13061 729 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 SOWAHCQ53LP3 525 aaPredicted RBP18.74■□□□□ 0.59
CLK3-217ENST00000566126 ZNF746Q6NUN9 644 aaPredicted RBP18.74■□□□□ 0.59
CLK3-217ENST00000566126 PLA2G4DQ86XP0 818 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 IGDCC4Q8TDY8 1250 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 DNASE1L2Q92874 299 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 LZTS2Q9BRK4 669 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 GPR62Q9BZJ7 368 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 PCDHA10Q9Y5I2 948 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 TICRRQ7Z2Z1 1910 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 CNTNAP2Q9UHC6 1331 aa18.74■□□□□ 0.59
CLK3-217ENST00000566126 IGLV3-22A0A075B6J6 115 aa18.73■□□□□ 0.59
CLK3-217ENST00000566126 OATP04181 439 aa18.73■□□□□ 0.59
CLK3-217ENST00000566126 PSAPP07602 524 aa18.73■□□□□ 0.59
CLK3-217ENST00000566126 SREBF1P36956 1147 aa18.73■□□□□ 0.59
CLK3-217ENST00000566126 NOVA1P51513 510 aaKnown RBP18.73■□□□□ 0.59
CLK3-217ENST00000566126 ANTXR2P58335 489 aa18.73■□□□□ 0.59
CLK3-217ENST00000566126 DSC1Q08554 894 aa18.73■□□□□ 0.59
CLK3-217ENST00000566126 HEATR6Q6AI08 1181 aaKnown RBP18.73■□□□□ 0.59
CLK3-217ENST00000566126 SMAP1Q8IYB5 467 aaPredicted RBP18.73■□□□□ 0.59
CLK3-217ENST00000566126 GPR65Q8IYL9 337 aa18.73■□□□□ 0.59
CLK3-217ENST00000566126 ZNF654Q8IZM8 581 aa18.73■□□□□ 0.59
CLK3-217ENST00000566126 ING5Q8WYH8 240 aa18.73■□□□□ 0.59
CLK3-217ENST00000566126 IL25Q9H293 177 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms