RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 SLFN12LQ6IEE8 588 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 NOTUMQ6P988 496 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 APBB1IPQ7Z5R6 666 aaPredicted RBP22.6■■□□□ 1.21
CLN3-212ENST00000564574 SEPT8Q92599 483 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 P2RX5Q93086 422 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 TSG101Q99816 390 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 TARS2Q9BW92 718 aaKnown RBP22.6■■□□□ 1.21
CLN3-212ENST00000564574 FTHL17Q9BXU8 183 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 TRAF3IP3Q9Y228 551 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 A0A1B0GUA9 196 aa22.59■■□□□ 1.21
CLN3-212ENST00000564574 B4GALT5O43286 388 aa22.59■■□□□ 1.21
CLN3-212ENST00000564574 CAVIN2O95810 425 aa22.59■■□□□ 1.21
CLN3-212ENST00000564574 PFKMP08237 780 aa22.59■■□□□ 1.21
CLN3-212ENST00000564574 LRRC63Q05C16 580 aa22.59■■□□□ 1.21
CLN3-212ENST00000564574 LRSAM1Q6UWE0 723 aa22.59■■□□□ 1.21
CLN3-212ENST00000564574 NELFBQ8WX92 580 aa22.59■■□□□ 1.21
CLN3-212ENST00000564574 OSBPL7Q9BZF2 842 aa22.59■■□□□ 1.21
CLN3-212ENST00000564574 NAT10Q9H0A0 1025 aaKnown RBP22.59■■□□□ 1.21
CLN3-212ENST00000564574 RWDD2AQ9UIY3 292 aa22.59■■□□□ 1.21
CLN3-212ENST00000564574 CTNND2Q9UQB3 1225 aa22.59■■□□□ 1.21
CLN3-212ENST00000564574 PIN4Q9Y237 131 aaKnown RBP22.59■■□□□ 1.21
CLN3-212ENST00000564574 STYXL1Q9Y6J8 313 aa22.59■■□□□ 1.21
CLN3-212ENST00000564574 TGFB1I1O43294 461 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 ZSCAN20P17040 1043 aaPredicted RBP22.58■■□□□ 1.21
CLN3-212ENST00000564574 GARTP22102 1010 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 PROZP22891 400 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 ITGB8P26012 769 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 HOXA11P31270 313 aaPredicted RBP22.58■■□□□ 1.21
CLN3-212ENST00000564574 NFIL3Q16649 462 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 EDRF1Q3B7T1 1238 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 KLHL10Q6JEL2 608 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 MPZL3Q6UWV2 235 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 C12orf56Q8IXR9 622 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 RPUSD2Q8IZ73 545 aaKnown RBP22.58■■□□□ 1.21
CLN3-212ENST00000564574 ADPGKQ9BRR6 497 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 SEMA6BQ9H3T3 888 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 PDZD7Q9H5P4 517 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 PTPRHQ9HD43 1115 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 NR2E3Q9Y5X4 410 aa22.58■■□□□ 1.21
CLN3-212ENST00000564574 TET1Q8NFU7 2136 aa22.58■■□□□ 1.2
CLN3-212ENST00000564574 TTLL13PA6NNM8 815 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 ANKRD63C9JTQ0 380 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 KIAA0391O15091 583 aaKnown RBP22.57■■□□□ 1.2
CLN3-212ENST00000564574 PPIGQ13427 754 aaKnown RBP eCLIP22.57■■□□□ 1.26e-7■■□□□ 11.8
CLN3-212ENST00000564574 MYBPC2Q14324 1141 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 DCAF4L1Q3SXM0 396 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 ANO6Q4KMQ2 910 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 ZCWPW2Q504Y3 356 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 SLC39A4Q6P5W5 647 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 CNKSR3Q6P9H4 555 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 SLC27A1Q6PCB7 646 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 TMEM174Q8WUU8 243 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 CPB2Q96IY4 423 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 DNAJC25Q9H1X3 360 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 AGPAT3Q9NRZ7 376 aa22.57■■□□□ 1.2
CLN3-212ENST00000564574 DNAH12Q6ZR08 3092 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 CLDN3O15551 220 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 MCF2P10911 925 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 MCL1Q07820 350 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 HSP90AA2PQ14568 343 aaPredicted RBP22.56■■□□□ 1.2
CLN3-212ENST00000564574 DSC3Q14574 896 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 ARMCX5Q6P1M9 558 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 C11orf57Q6ZUT1 292 aaPredicted RBP22.56■■□□□ 1.2
CLN3-212ENST00000564574 DBF4BQ8NFT6 615 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 BPIFA3Q9BQP9 254 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 TCHPQ9BT92 498 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 TRAIPQ9BWF2 469 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 TMX1Q9H3N1 280 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 USP20Q9Y2K6 914 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 MICAL3Q7RTP6 2002 aa22.56■■□□□ 1.2
CLN3-212ENST00000564574 ABLIM1O14639 778 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 CSF2RAP15509 400 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 RPL13P26373 211 aaKnown RBP22.55■■□□□ 1.2
CLN3-212ENST00000564574 MATR3P43243 847 aaKnown RBP eCLIP22.55■■□□□ 1.2
CLN3-212ENST00000564574 FPGSQ05932 587 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 NOLC1Q14978 699 aaKnown RBP eCLIP22.55■■□□□ 1.2
CLN3-212ENST00000564574 ZNF568Q3ZCX4 644 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 EEF1DP3Q658K8 133 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 ANKRD40Q6AI12 368 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 DEFB128Q7Z7B8 93 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 SLC9A9Q8IVB4 645 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 POMGNT1Q8WZA1 660 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 IKZF4Q9H2S9 585 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 TSPY26PQ9H489 355 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 IL23AQ9NPF7 189 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 ANKFY1Q9P2R3 1169 aa22.55■■□□□ 1.2
CLN3-212ENST00000564574 A0A0B4J269 797 aa22.54■■□□□ 1.2
CLN3-212ENST00000564574 LDHAP00338 332 aaKnown RBP22.54■■□□□ 1.2
CLN3-212ENST00000564574 ADSSP30520 456 aa22.54■■□□□ 1.2
CLN3-212ENST00000564574 RAB27AP51159 221 aa22.54■■□□□ 1.2
CLN3-212ENST00000564574 KYAT1Q16773 422 aa22.54■■□□□ 1.2
CLN3-212ENST00000564574 TWF2Q6IBS0 349 aaKnown RBP22.54■■□□□ 1.2
CLN3-212ENST00000564574 TTI2Q6NXR4 508 aa22.54■■□□□ 1.2
CLN3-212ENST00000564574 BADQ92934 168 aa22.54■■□□□ 1.2
CLN3-212ENST00000564574 ZBTB45Q96K62 511 aaPredicted RBP22.54■■□□□ 1.2
CLN3-212ENST00000564574 CDT1Q9H211 546 aa22.54■■□□□ 1.2
CLN3-212ENST00000564574 RGS18Q9NS28 235 aa22.54■■□□□ 1.2
CLN3-212ENST00000564574 C1orf112Q9NSG2 853 aa22.54■■□□□ 1.2
CLN3-212ENST00000564574 TRIM49BA6NDI0 452 aa22.53■■□□□ 1.2
CLN3-212ENST00000564574 TISP43B9A030 160 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms