RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 H0YHG0 523 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 PLIN1O60240 522 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 CDC45O75419 566 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 PRLP01236 227 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 FAM163BP0C2L3 166 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 SKILP12757 684 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 ROM1Q03395 351 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 CDSNQ15517 529 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 RNF151Q2KHN1 245 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 AGBL4Q5VU57 503 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 CCSAPQ6IQ19 270 aaPredicted RBP5.89□□□□□ -1.47
VPS35-205ENST00000563984 USP30Q70CQ3 517 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 LARP4Q71RC2 724 aaKnown RBP eCLIP5.89□□□□□ -1.47
VPS35-205ENST00000563984 LRRTM3Q86VH5 581 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 RTKN2Q8IZC4 609 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 C17orf50Q8WW18 174 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 ATRIPQ8WXE1 791 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 CDK5RAP3Q96JB5 506 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 CDHR1Q96JP9 859 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 C16orf92Q96LL3 132 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 RMDN2Q96LZ7 410 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 LRRC37BQ96QE4 947 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 CDK5RAP1Q96SZ6 601 aaKnown RBP5.89□□□□□ -1.47
VPS35-205ENST00000563984 FEZ1Q99689 392 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 SEMA4AQ9H3S1 761 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 TSPY26PQ9H489 355 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 MAFFQ9ULX9 164 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 LZTS1Q9Y250 596 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 NR2E1Q9Y466 385 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 MRPL42Q9Y6G3 142 aaKnown RBP5.89□□□□□ -1.47
VPS35-205ENST00000563984 DDX49Q9Y6V7 483 aaKnown RBP5.89□□□□□ -1.47
VPS35-205ENST00000563984 UBA6A0AVT1 1052 aaPredicted RBP5.88□□□□□ -1.47
VPS35-205ENST00000563984 TMCO5BA8MYB1 307 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 IFRD1O00458 451 aaPredicted RBP5.88□□□□□ -1.47
VPS35-205ENST00000563984 ARHGAP6O43182 974 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 ZNF623O75123 536 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 VIL1P09327 827 aaKnown RBP5.88□□□□□ -1.47
VPS35-205ENST00000563984 ZSCAN20P17040 1043 aaPredicted RBP5.88□□□□□ -1.47
VPS35-205ENST00000563984 SH3BGRP55822 239 aaPredicted RBP5.88□□□□□ -1.47
VPS35-205ENST00000563984 ADCY1Q08828 1119 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 PCOLCEQ15113 449 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 EPHA7Q15375 998 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 TKFCQ3LXA3 575 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 MAP9Q49MG5 647 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 TTC38Q5R3I4 469 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 NIM1KQ8IY84 436 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 CHPFQ8IZ52 775 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 GIMAP8Q8ND71 665 aaPredicted RBP5.88□□□□□ -1.47
VPS35-205ENST00000563984 MAML3Q96JK9 1138 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 C8orf48Q96LL4 319 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 MPHOSPH6Q99547 160 aaKnown RBP5.88□□□□□ -1.47
VPS35-205ENST00000563984 IQCGQ9H095 443 aaKnown RBP5.88□□□□□ -1.47
VPS35-205ENST00000563984 KLC2Q9H0B6 622 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 OR10A2Q9H208 303 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 DEF6Q9H4E7 631 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 RMI1Q9H9A7 625 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 IFT57Q9NWB7 429 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 USP25Q9UHP3 1055 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 ASAP1Q9ULH1 1129 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 OAZ3Q9UMX2 235 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 RABL2BQ9UNT1 228 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 PLAAQ9Y263 795 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 VWA7Q9Y334 891 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 TCAF1Q9Y4C2 921 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 SPO11Q9Y5K1 396 aa5.88□□□□□ -1.47
VPS35-205ENST00000563984 FZD7O75084 574 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 PPFIA2O75334 1257 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 F2P00734 622 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 HNRNPCP07910 306 aaKnown RBP eCLIP5.87□□□□□ -1.47
VPS35-205ENST00000563984 RBP3P10745 1247 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 CR2P20023 1033 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 RRM1P23921 792 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 HSD3B2P26439 372 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 PIK3CAP42336 1068 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 MRE11P49959 708 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 NEK4P51957 841 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 GTF2A1P52655 376 aaPredicted RBP5.87□□□□□ -1.47
VPS35-205ENST00000563984 SEPT2Q15019 361 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 LONRF1Q17RB8 773 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 TCTN3Q6NUS6 607 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 JAZF1Q86VZ6 243 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 SKAP1Q86WV1 359 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 ZZZ3Q8IYH5 903 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 RPUSD2Q8IZ73 545 aaKnown RBP5.87□□□□□ -1.47
VPS35-205ENST00000563984 AHI1Q8N157 1196 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 PPM1KQ8N3J5 372 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 PRPF38AQ8NAV1 312 aaKnown RBP5.87□□□□□ -1.47
VPS35-205ENST00000563984 Q8TCH9 128 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 GNRHR2Q96P88 292 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 KIAA1683Q9H0B3 1180 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 DHX36Q9H2U1 1008 aaKnown RBP5.87□□□□□ -1.47
VPS35-205ENST00000563984 RWDD1Q9H446 243 aaPredicted RBP5.87□□□□□ -1.47
VPS35-205ENST00000563984 POLG2Q9UHN1 485 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 ZFR2Q9UPR6 939 aaKnown RBP5.87□□□□□ -1.47
VPS35-205ENST00000563984 TSC22D4Q9Y3Q8 395 aa5.87□□□□□ -1.47
VPS35-205ENST00000563984 SHTN1A0MZ66 631 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 FOXS1O43638 330 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 GAS7O60861 476 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 SLC9A1P19634 815 aa5.86□□□□□ -1.47
VPS35-205ENST00000563984 STIP1P31948 543 aaKnown RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms