RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 CHMP2AO43633 222 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 MAFO75444 373 aaPredicted RBP11.66□□□□□ -0.54
SF3B3-204ENST00000563739 GLUD1P00367 558 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 SFPQP23246 707 aaKnown RBP eCLIP11.66□□□□□ -0.54
SF3B3-204ENST00000563739 RAB27AP51159 221 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 GPC5P78333 572 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 NPY5RQ15761 445 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 DCLRE1AQ6PJP8 1040 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 CYP26C1Q6V0L0 522 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 GET4Q7L5D6 327 aaPredicted RBP11.66□□□□□ -0.54
SF3B3-204ENST00000563739 ZNF410Q86VK4 478 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 ZNF687Q8N1G0 1237 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 REXO1Q8N1G1 1221 aaKnown RBP11.66□□□□□ -0.54
SF3B3-204ENST00000563739 SCLT1Q96NL6 688 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 RIT2Q99578 217 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 EIF2AQ9BY44 585 aaKnown RBP11.66□□□□□ -0.54
SF3B3-204ENST00000563739 GPR62Q9BZJ7 368 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 MRPL17Q9NRX2 175 aaKnown RBP11.66□□□□□ -0.54
SF3B3-204ENST00000563739 CACNG4Q9UBN1 327 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 SEPT9Q9UHD8 586 aaPredicted RBP11.66□□□□□ -0.54
SF3B3-204ENST00000563739 SIT1Q9Y3P8 196 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 CEP295Q9C0D2 2601 aa11.66□□□□□ -0.54
SF3B3-204ENST00000563739 KLF18A0A0U1RQI7 1052 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 EML1O00423 815 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 NRG2O14511 850 aaPredicted RBP11.65□□□□□ -0.54
SF3B3-204ENST00000563739 TDP2O95551 362 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 URODP06132 367 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 CPA1P15085 419 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 RPL17P18621 184 aaKnown RBP11.65□□□□□ -0.54
SF3B3-204ENST00000563739 NCLP19338 710 aaKnown RBP11.65□□□□□ -0.54
SF3B3-204ENST00000563739 GLUD2P49448 558 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 AK2P54819 239 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 RNASELQ05823 741 aaKnown RBP11.65□□□□□ -0.54
SF3B3-204ENST00000563739 NTRK3Q16288 839 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 ZNF528Q3MIS6 628 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 CATSPER4Q7RTX7 472 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 RHPN2Q8IUC4 686 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 ETNPPLQ8TBG4 499 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 NXPE3Q969Y0 559 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 ZFP42Q96MM3 310 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 NLRP4Q96MN2 994 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 EPC1Q9H2F5 836 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 NRBP2Q9NSY0 501 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 SUCLA2Q9P2R7 463 aaPredicted RBP11.65□□□□□ -0.54
SF3B3-204ENST00000563739 FAN1Q9Y2M0 1017 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 ASPMQ8IZT6 3477 aa11.65□□□□□ -0.54
SF3B3-204ENST00000563739 F5P12259 2224 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 TICRRQ7Z2Z1 1910 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 CNTNAP2Q9UHC6 1331 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 M0R2N6 131 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 ADH1AP07327 375 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 SCNN1GP51170 649 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 NPEPPSP55786 919 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 BMS1Q14692 1282 aaKnown RBP11.64□□□□□ -0.55
SF3B3-204ENST00000563739 AMHR2Q16671 573 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 XKR3Q5GH77 459 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 VARS2Q5ST30 1063 aaKnown RBP11.64□□□□□ -0.55
SF3B3-204ENST00000563739 ZC3H14Q6PJT7 736 aaKnown RBP11.64□□□□□ -0.55
SF3B3-204ENST00000563739 PRKD2Q9BZL6 878 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 GLT8D2Q9H1C3 349 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 CXCL16Q9H2A7 254 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 PRMT8Q9NR22 394 aaPredicted RBP11.64□□□□□ -0.55
SF3B3-204ENST00000563739 FBXW11Q9UKB1 542 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 SMG5Q9UPR3 1016 aaKnown RBP11.64□□□□□ -0.55
SF3B3-204ENST00000563739 SAMM50Q9Y512 469 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 HES2Q9Y543 173 aa11.64□□□□□ -0.55
SF3B3-204ENST00000563739 CNOT1A5YKK6 2376 aaKnown RBP11.63□□□□□ -0.55
SF3B3-204ENST00000563739 WDFY3Q8IZQ1 3526 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 KANSL1LA0AUZ9 987 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 CARNS1A5YM72 827 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 STK25O00506 426 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 SPTLC1O15269 473 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 ADAM12O43184 909 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 TSPAN1O60635 241 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 GAS7O60861 476 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 KINO60870 393 aaKnown RBP11.63□□□□□ -0.55
SF3B3-204ENST00000563739 ZMYND10O75800 440 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 SKIP12755 728 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 CD72P21854 359 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 IGFBP6P24592 240 aaPredicted RBP11.63□□□□□ -0.55
SF3B3-204ENST00000563739 TARSP26639 723 aaKnown RBP11.63□□□□□ -0.55
SF3B3-204ENST00000563739 SFNP31947 248 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 MLH1P40692 756 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 JAK3P52333 1124 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 RCAN1P53805 252 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 SNW1Q13573 536 aaKnown RBP11.63□□□□□ -0.55
SF3B3-204ENST00000563739 MLF2Q15773 248 aaPredicted RBP11.63□□□□□ -0.55
SF3B3-204ENST00000563739 RTP2Q5QGT7 225 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 LRCH2Q5VUJ6 765 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 TSSK4Q6SA08 328 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 PALB2Q86YC2 1186 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 GLYCTKQ8IVS8 523 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 ITFG1Q8TB96 612 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 HDAC7Q8WUI4 952 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 RABGGTAQ92696 567 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 PHKBQ93100 1093 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 CLDN23Q96B33 292 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 CCDC136Q96JN2 1154 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 GAD1Q99259 594 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 HINFPQ9BQA5 517 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms