RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 NTPCRQ9BSD7 190 aaKnown RBP9.77□□□□□ -0.85
VPS39-207ENST00000563692 MKNK1Q9BUB5 465 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 EDEM3Q9BZQ6 932 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 BCAS3Q9H6U6 928 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 KMT5AQ9NQR1 393 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 MSRAQ9UJ68 235 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 CAPN11Q9UMQ6 739 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 IGSF9BQ9UPX0 1349 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 A0A1W2PQJ5 194 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 GOLGA6L9A6NEM1 432 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 ZBBXA8MT70 800 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 KIF2AO00139 706 aaPredicted RBP9.76□□□□□ -0.85
VPS39-207ENST00000563692 OFD1O75665 1012 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 GYPCP04921 128 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 ZNF286BP0CG31 522 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 DNAJB2P25686 324 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 HOXD13P35453 343 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 KRT9P35527 623 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 TCF7P36402 384 aaPredicted RBP9.76□□□□□ -0.85
VPS39-207ENST00000563692 PSEN2P49810 448 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 NCKAP1LP55160 1127 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 MFSD10Q14728 455 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 PPP2R5AQ15172 486 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 RAB30Q15771 203 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 PTPN21Q16825 1174 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 KIAA0753Q2KHM9 967 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 MTERF2Q49AM1 385 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 MIIPQ5JXC2 388 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 CEP135Q66GS9 1140 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 CYP26C1Q6V0L0 522 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 OTOP2Q7RTS6 562 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 SESTD1Q86VW0 696 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 SLC9A9Q8IVB4 645 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 TRIM59Q8IWR1 403 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 NEK11Q8NG66 645 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 CAGE1Q8TC20 777 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 TMEM174Q8WUU8 243 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 BBXQ8WY36 941 aaPredicted RBP9.76□□□□□ -0.85
VPS39-207ENST00000563692 GLG1Q92896 1179 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 TIFAQ96CG3 184 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 FIZ1Q96SL8 496 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 STRA6Q9BX79 667 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 SMARCAD1Q9H4L7 1026 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 MMRN2Q9H8L6 949 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 UMODL1Q5DID0 1318 aa9.76□□□□□ -0.85
VPS39-207ENST00000563692 TMEM150BA6NC51 233 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 CLIC2O15247 247 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 SLC16A4O15374 487 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 TGFB1I1O43294 461 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 GAS2O43903 313 aaKnown RBP9.75□□□□□ -0.85
VPS39-207ENST00000563692 EXOC3O60645 756 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 LGR5O75473 907 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 PPP1R37O75864 691 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 PARNO95453 639 aaKnown RBP9.75□□□□□ -0.85
VPS39-207ENST00000563692 F2P00734 622 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 AFPP02771 609 aaKnown RBP9.75□□□□□ -0.85
VPS39-207ENST00000563692 KRT13P13646 458 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 ZBED6P86452 979 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 PTPN14Q15678 1187 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 C16orf59Q7L2K0 433 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 DEFB128Q7Z7B8 93 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 FAM186BQ8IYM0 893 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 CCAR2Q8N163 923 aaKnown RBP9.75□□□□□ -0.85
VPS39-207ENST00000563692 PPP1R13LQ8WUF5 828 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 TCP11Q8WWU5 503 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 SCLYQ96I15 445 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 GPR20Q99678 358 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 SH2D3AQ9BRG2 576 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 NUCKS1Q9H1E3 243 aaKnown RBP9.75□□□□□ -0.85
VPS39-207ENST00000563692 WNT8AQ9H1J5 351 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 AGPAT3Q9NRZ7 376 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 ABHD10Q9NUJ1 306 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 GTF2IRD1Q9UHL9 959 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 ZNF215Q9UL58 517 aaPredicted RBP9.75□□□□□ -0.85
VPS39-207ENST00000563692 TBX20Q9UMR3 447 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 SLC4A7Q9Y6M7 1214 aa9.75□□□□□ -0.85
VPS39-207ENST00000563692 LOXHD1Q8IVV2 1947 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 TTC26A0AVF1 554 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 AKAP3O75969 853 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 IQCF3P0C7M6 154 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 GNAT1P11488 350 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 HOXD8P13378 290 aaPredicted RBP9.74□□□□□ -0.85
VPS39-207ENST00000563692 FOSL2P15408 326 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 ATP4AP20648 1035 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 NPTX2P47972 431 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 GOLGA8FQ08AF8 430 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 KCNA1Q09470 495 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 GOLGA8DPQ0D2H9 430 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 CETN1Q12798 172 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 KCNH2Q12809 1159 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 STRN3Q13033 797 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 EMC2Q15006 297 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 HSDL1Q3SXM5 330 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 RASIP1Q5U651 963 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 IER5Q5VY09 327 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 GDF6Q6KF10 455 aaPredicted RBP9.74□□□□□ -0.85
VPS39-207ENST00000563692 CACNA2D4Q7Z3S7 1137 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 C12orf56Q8IXR9 622 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 C17orf53Q8N3J3 647 aaPredicted RBP9.74□□□□□ -0.85
VPS39-207ENST00000563692 KAT2BQ92831 832 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms