RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 C2CD4DB7Z1M9 353 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 BAG4O95429 457 aaKnown RBP12.97□□□□□ -0.33
USP3-220ENST00000561381 POMCP01189 267 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 SSBP05455 408 aaKnown RBP eCLIP12.97□□□□□ -0.33
USP3-220ENST00000561381 MRE11P49959 708 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 ITIH3Q06033 890 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 BMS1Q14692 1282 aaKnown RBP12.97□□□□□ -0.33
USP3-220ENST00000561381 CALCRLQ16602 461 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 CES5AQ6NT32 575 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 EXOC8Q8IYI6 725 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 TMEM87AQ8NBN3 555 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 SMG8Q8ND04 991 aaKnown RBP12.97□□□□□ -0.33
USP3-220ENST00000561381 URGCPQ8TCY9 931 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 ASAP3Q8TDY4 903 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 RSPH1Q8WYR4 309 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 CPB2Q96IY4 423 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 PHOX2BQ99453 314 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 KCNH6Q9H252 994 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 SMOC2Q9H3U7 446 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 HES2Q9Y543 173 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 IRAK3Q9Y616 596 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 PIEZO1Q92508 2521 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 ASAP2O43150 1006 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 GAS2O43903 313 aaKnown RBP12.96□□□□□ -0.33
USP3-220ENST00000561381 TSPAN1O60635 241 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 PDGFBP01127 241 aaPredicted RBP12.96□□□□□ -0.33
USP3-220ENST00000561381 NEFLP07196 543 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 NCLP19338 710 aaKnown RBP12.96□□□□□ -0.33
USP3-220ENST00000561381 VCPP55072 806 aaKnown RBP12.96□□□□□ -0.33
USP3-220ENST00000561381 PTENP60484 403 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 ST3GAL1Q11201 340 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 PTPN14Q15678 1187 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 ZBTB33Q86T24 672 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 SUGP1Q8IWZ8 645 aaKnown RBP12.96□□□□□ -0.33
USP3-220ENST00000561381 DIS3L2Q8IYB7 885 aaKnown RBP12.96□□□□□ -0.33
USP3-220ENST00000561381 FBXL6Q8N531 539 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 KREMEN2Q8NCW0 462 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 TCP11Q8WWU5 503 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 HSD17B14Q9BPX1 270 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 TTC12Q9H892 705 aaPredicted RBP12.96□□□□□ -0.33
USP3-220ENST00000561381 BRMS1Q9HCU9 246 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 PCDHA12Q9UN75 941 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 NR2E1Q9Y466 385 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 IPPQ9Y573 584 aa12.96□□□□□ -0.33
USP3-220ENST00000561381 CNTNAP2Q9UHC6 1331 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 INO80B-WBP1J3KQ70 363 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 NRP1O14786 923 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 LILRB3O75022 631 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 ERLIN2O94905 339 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 LYPLA2O95372 231 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 ALDH2P05091 517 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 ASGR2P07307 311 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 CNPP09543 421 aaKnown RBP12.95□□□□□ -0.34
USP3-220ENST00000561381 MLH1P40692 756 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 TXKP42681 527 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 MTHFRP42898 656 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 CAPSQ13938 189 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 GIT2Q14161 759 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 AMHR2Q16671 573 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 TMC5Q6UXY8 1006 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 TAS1R1Q7RTX1 841 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 CABP7Q86V35 215 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 PIGOQ8TEQ8 1089 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 NECTIN4Q96NY8 510 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 KLHL5Q96PQ7 755 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 FAM193BQ96PV7 902 aaPredicted RBP12.95□□□□□ -0.34
USP3-220ENST00000561381 GAD1Q99259 594 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 APOL6Q9BWW8 343 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 TMEM60Q9H2L4 133 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 DZANK1Q9NVP4 752 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 MARCH5Q9NX47 278 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 MIOSQ9NXC5 875 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 KANSL3Q9P2N6 904 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 FAN1Q9Y2M0 1017 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 PRG3Q9Y2Y8 225 aaPredicted RBP12.95□□□□□ -0.34
USP3-220ENST00000561381 KMT2EQ8IZD2 1858 aa12.95□□□□□ -0.34
USP3-220ENST00000561381 CARNS1A5YM72 827 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 F8W810 466 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 C2CD2LO14523 706 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 B4GALT5O43286 388 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 NEMFO60524 1076 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 BRD1O95696 1058 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 ITGA4P13612 1032 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 ARF4P18085 180 aaPredicted RBP12.94□□□□□ -0.34
USP3-220ENST00000561381 ATP2B1P20020 1258 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 GLRA2P23416 452 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 KLRC2P26717 231 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 ARL2P36404 184 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 RARRES1P49788 294 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 NEK4P51957 841 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 GUCY1B3Q02153 619 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 MBTD1Q05BQ5 628 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 TCF15Q12870 199 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 MXD4Q14582 209 aaPredicted RBP12.94□□□□□ -0.34
USP3-220ENST00000561381 ATAT1Q5SQI0 421 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 KIAA1841Q6NSI8 718 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 NOTUMQ6P988 496 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 CDR2LQ86X02 465 aaPredicted RBP12.94□□□□□ -0.34
USP3-220ENST00000561381 COLGALT2Q8IYK4 626 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 RIPOR3Q96MK2 946 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms