RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 DNM2P50570 870 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 NUBP1P53384 320 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 MTMR3Q13615 1198 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 TTC38Q5R3I4 469 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 TWF2Q6IBS0 349 aaKnown RBP15.56■□□□□ 0.08
LDLR-213ENST00000560502 KIAA1841Q6NSI8 718 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 GLB1LQ6UWU2 654 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 ZBTB33Q86T24 672 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 UBALD2Q8IYN6 164 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 KRI1Q8N9T8 703 aaKnown RBP15.56■□□□□ 0.08
LDLR-213ENST00000560502 ZNF579Q8NAF0 562 aaKnown RBP15.56■□□□□ 0.08
LDLR-213ENST00000560502 AUTS2Q8WXX7 1259 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 VN1R3Q9BXE9 311 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 INO80BQ9C086 356 aaPredicted RBP15.56■□□□□ 0.08
LDLR-213ENST00000560502 FAM105AQ9NUU6 356 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 TMEM63CQ9P1W3 806 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 SUCLA2Q9P2R7 463 aaPredicted RBP15.56■□□□□ 0.08
LDLR-213ENST00000560502 PCDHA7Q9UN72 937 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 PIN4Q9Y237 131 aaKnown RBP15.56■□□□□ 0.08
LDLR-213ENST00000560502 LAD1O00515 517 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 OFD1O75665 1012 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 GALTP07902 379 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 WEE2P0C1S8 567 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 EPCAMP16422 314 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 CMA1P23946 247 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 RAB27AP51159 221 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 PSMC5P62195 406 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 FAM160A1Q05DH4 1040 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 GIT2Q14161 759 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 NONOQ15233 471 aaKnown RBP eCLIP15.55■□□□□ 0.085e-7■□□□□ 10.7
LDLR-213ENST00000560502 NOMO2Q5JPE7 1267 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 RARS2Q5T160 578 aaKnown RBP15.55■□□□□ 0.08
LDLR-213ENST00000560502 RHPN2Q8IUC4 686 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 KSR1Q8IVT5 923 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 ZDHHC14Q8IZN3 488 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 C12orf76Q8N812 135 aaPredicted RBP15.55■□□□□ 0.08
LDLR-213ENST00000560502 NAP1L4Q99733 375 aaKnown RBP15.55■□□□□ 0.08
LDLR-213ENST00000560502 IFT122Q9HBG6 1241 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 AGPAT5Q9NUQ2 364 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 FAM86C1Q9NVL1 165 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 VAV3Q9UKW4 847 aa15.55■□□□□ 0.08
LDLR-213ENST00000560502 RIF1Q5UIP0 2472 aaKnown RBP15.54■□□□□ 0.08
LDLR-213ENST00000560502 FAM237AA0A1B0GTK4 181 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 EML1O00423 815 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 SLC37A4O43826 429 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 SLC11A1P49279 550 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 BMS1Q14692 1282 aaKnown RBP15.54■□□□□ 0.08
LDLR-213ENST00000560502 PTPN14Q15678 1187 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 LONRF3Q496Y0 759 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 AXDND1Q5T1B0 1012 aaPredicted RBP15.54■□□□□ 0.08
LDLR-213ENST00000560502 ARL6IP4Q66PJ3 421 aaKnown RBP15.54■□□□□ 0.08
LDLR-213ENST00000560502 PLA2G4FQ68DD2 849 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 KANK3Q6NY19 840 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 PIK3AP1Q6ZUJ8 805 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 CATSPER4Q7RTX7 472 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 FEZF2Q8TBJ5 459 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 NLRP4Q96MN2 994 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 GZF1Q9H116 711 aaPredicted RBP15.54■□□□□ 0.08
LDLR-213ENST00000560502 IRF2BPLQ9H1B7 796 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 NUP62CLQ9H1M0 184 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 SMOC2Q9H3U7 446 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 CYP26B1Q9NR63 512 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 DNAJB4Q9UDY4 337 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 USTQ9Y2C2 406 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 INPP5FQ9Y2H2 1132 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 USP34Q70CQ2 3546 aa15.54■□□□□ 0.08
LDLR-213ENST00000560502 FAM186AA6NE01 2351 aa15.53■□□□□ 0.08
LDLR-213ENST00000560502 CA8P35219 290 aa15.53■□□□□ 0.08
LDLR-213ENST00000560502 ATP2C1P98194 919 aaPredicted RBP15.53■□□□□ 0.08
LDLR-213ENST00000560502 PPP2R5CQ13362 524 aa15.53■□□□□ 0.08
LDLR-213ENST00000560502 AGMOQ6ZNB7 445 aa15.53■□□□□ 0.08
LDLR-213ENST00000560502 MRPL10Q7Z7H8 261 aaKnown RBP15.53■□□□□ 0.08
LDLR-213ENST00000560502 FSIP1Q8NA03 581 aa15.53■□□□□ 0.08
LDLR-213ENST00000560502 TDRD5Q8NAT2 981 aaKnown RBP15.53■□□□□ 0.08
LDLR-213ENST00000560502 JPH2Q9BR39 696 aaPredicted RBP15.53■□□□□ 0.08
LDLR-213ENST00000560502 KCNMB3Q9NPA1 279 aa15.53■□□□□ 0.08
LDLR-213ENST00000560502 WRAP73Q9P2S5 460 aaPredicted RBP15.53■□□□□ 0.08
LDLR-213ENST00000560502 DDX25Q9UHL0 483 aaKnown RBP15.53■□□□□ 0.08
LDLR-213ENST00000560502 PCDHB6Q9Y5E3 794 aa15.53■□□□□ 0.08
LDLR-213ENST00000560502 PCDHB2Q9Y5E7 798 aa15.53■□□□□ 0.08
LDLR-213ENST00000560502 SRPRBQ9Y5M8 271 aaKnown RBP15.53■□□□□ 0.08
LDLR-213ENST00000560502 SPTBN4Q9H254 2564 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 GALR2O43603 387 aaPredicted RBP15.52■□□□□ 0.08
LDLR-213ENST00000560502 KINO60870 393 aaKnown RBP15.52■□□□□ 0.08
LDLR-213ENST00000560502 ASGR2P07307 311 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 LIG1P18858 919 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 QARSP47897 775 aaKnown RBP15.52■□□□□ 0.08
LDLR-213ENST00000560502 NPEPPSP55786 919 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 INF2Q27J81 1249 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 ATAT1Q5SQI0 421 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 UBXN11Q5T124 520 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 NEK8Q86SG6 692 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 ZNF280BQ86YH2 543 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 TMEM105Q8N8V8 129 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 PGBD4Q96DM1 585 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 CLSTN2Q9H4D0 955 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 DHX33Q9H6R0 707 aaKnown RBP15.52■□□□□ 0.08
LDLR-213ENST00000560502 MINDY3Q9H8M7 445 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 FBXO2Q9UK22 296 aaPredicted RBP15.52■□□□□ 0.08
LDLR-213ENST00000560502 PPME1Q9Y570 386 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms