RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	ADAM2	Q99965	735 aa		4.38	□□□□□ -1.71
SPG11-222	ENST00000560435	MYL10	Q9BUA6	226 aa		4.38	□□□□□ -1.71
SPG11-222	ENST00000560435	USP36	Q9P275	1121 aa	Known RBP	4.38	□□□□□ -1.71
SPG11-222	ENST00000560435	TLK1	Q9UKI8	766 aa		4.38	□□□□□ -1.71
SPG11-222	ENST00000560435	PTPDC1	A2A3K4	754 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	UNC119B	A6NIH7	251 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	MARCH11	A6NNE9	402 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	HLA-DOA	P06340	250 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	SPATA31D3	P0C874	917 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	EGR2	P11161	476 aa	Predicted RBP	4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	HSP90B1	P14625	803 aa	Known RBP	4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	MPL	P40238	635 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	TP53BP2	Q13625	1128 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	DDB1	Q16531	1140 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	ESRP1	Q6NXG1	681 aa	Known RBP	4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	BTNL9	Q6UXG8	535 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	UNQ6494/PRO21346	Q6UXR6	183 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	SPATA31D4	Q6ZUB0	917 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	SYT12	Q8IV01	421 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	SCARB1	Q8WTV0	552 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	ASB10	Q8WXI3	467 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	SMG7	Q92540	1137 aa	Known RBP	4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	TEX101	Q9BY14	249 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	SAMD15	Q9P1V8	674 aa		4.37	□□□□□ -1.71
SPG11-222	ENST00000560435	RBMXL2	O75526	392 aa	Known RBP	4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	APOL3	O95236	402 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	SPDEF	O95238	335 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	LY86	O95711	162 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	IGLV2-14	P01704	120 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	CTGF	P29279	349 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	DUSP2	Q05923	314 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	CD69	Q07108	199 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	RASA3	Q14644	834 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	PDCD4	Q53EL6	469 aa	Known RBP	4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	XYLT1	Q86Y38	959 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	ZSWIM2	Q8NEG5	633 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	OR10H5	Q8NGA6	315 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	DUSP26	Q9BV47	211 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	POFUT1	Q9H488	388 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	CABP5	Q9NP86	173 aa		4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	INTS7	Q9NVH2	962 aa	Known RBP	4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	COL3A1	P02461	1466 aa	Predicted RBP	4.36	□□□□□ -1.71
SPG11-222	ENST00000560435	RANGAP1	P46060	587 aa	Predicted RBP	4.35	□□□□□ -1.71
SPG11-222	ENST00000560435	ARMC6	Q6NXE6	501 aa		4.35	□□□□□ -1.71
SPG11-222	ENST00000560435	TAS1R1	Q7RTX1	841 aa		4.35	□□□□□ -1.71
SPG11-222	ENST00000560435	JMY	Q8N9B5	988 aa		4.35	□□□□□ -1.71
SPG11-222	ENST00000560435	ELF4	Q99607	663 aa	Predicted RBP	4.35	□□□□□ -1.71
SPG11-222	ENST00000560435	SPON1	Q9HCB6	807 aa		4.35	□□□□□ -1.71
SPG11-222	ENST00000560435	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
SPG11-222	ENST00000560435	RNF7	Q9UBF6	113 aa		4.35	□□□□□ -1.71
SPG11-222	ENST00000560435	PCDHB6	Q9Y5E3	794 aa		4.35	□□□□□ -1.71
SPG11-222	ENST00000560435	MAST3	O60307	1309 aa		4.35	□□□□□ -1.71
SPG11-222	ENST00000560435	SETD1B	Q9UPS6	1966 aa	Known RBP	4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	DNAJC9-AS1	A6NH13	148 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	SEC24D	O94855	1032 aa	Predicted RBP	4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	MATN4	O95460	622 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	RBP3	P10745	1247 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	SLC9A1	P19634	815 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	MGAT1	P26572	445 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	IGFALS	P35858	605 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	MXRA7	P84157	204 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	ZZZ3	Q8IYH5	903 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	SLC44A3	Q8N4M1	653 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	CDYL2	Q8N8U2	506 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	DEPDC7	Q96QD5	511 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	NCOA5	Q9HCD5	579 aa	Known RBP	4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	SEMA4G	Q9NTN9	838 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	PODXL2	Q9NZ53	605 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	B4GALT6	Q9UBX8	382 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	SPO11	Q9Y5K1	396 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	FPGT-TNNI3K	V9GXZ4	949 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435	MYPN	Q86TC9	1320 aa		4.34	□□□□□ -1.71
SPG11-222	ENST00000560435		B5MCH6	92 aa		4.33	□□□□□ -1.72
SPG11-222	ENST00000560435	PCDH8	O95206	1070 aa		4.33	□□□□□ -1.72
SPG11-222	ENST00000560435	ITGAM	P11215	1152 aa		4.33	□□□□□ -1.72
SPG11-222	ENST00000560435	REST	Q13127	1097 aa		4.33	□□□□□ -1.72
SPG11-222	ENST00000560435	MAPK7	Q13164	816 aa		4.33	□□□□□ -1.72
SPG11-222	ENST00000560435	CREB3L3	Q68CJ9	461 aa		4.33	□□□□□ -1.72
SPG11-222	ENST00000560435	C1QL2	Q7Z5L3	287 aa		4.33	□□□□□ -1.72
SPG11-222	ENST00000560435	MSL3	Q8N5Y2	521 aa	Known RBP	4.33	□□□□□ -1.72
SPG11-222	ENST00000560435	C9orf106	Q8NAJ2	232 aa		4.33	□□□□□ -1.72
SPG11-222	ENST00000560435	RTF1	Q92541	710 aa	Known RBP	4.33	□□□□□ -1.72
SPG11-222	ENST00000560435	RNF181	Q9P0P0	153 aa		4.33	□□□□□ -1.72
SPG11-222	ENST00000560435	FAM221B	A6H8Z2	402 aa		4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	PLD2	O14939	933 aa		4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	C1QL1	O75973	258 aa		4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	ASL	P04424	464 aa		4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	FDXR	P22570	491 aa		4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	SERINC3	Q13530	473 aa		4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	ZNF169	Q14929	603 aa	Predicted RBP	4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	FAM102A	Q5T9C2	384 aa	Predicted RBP	4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	EFCAB12	Q6NXP0	572 aa		4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	ZNF384	Q8TF68	577 aa		4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	FDXACB1	Q9BRP7	624 aa	Predicted RBP	4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	C1QTNF7	Q9BXJ2	289 aa		4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	KIAA1586	Q9HCI6	787 aa		4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	PPP1R1B	Q9UD71	204 aa	Predicted RBP	4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	MAP3K2	Q9Y2U5	619 aa		4.32	□□□□□ -1.72
SPG11-222	ENST00000560435	SALL3	Q9BXA9	1300 aa		4.31	□□□□□ -1.72
SPG11-222	ENST00000560435		A0A1W2PR48	441 aa		4.31	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms