RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 L1TD1Q5T7N2 865 aaKnown RBP23.91■■□□□ 1.42
SNX1-210ENST00000560260 SLC39A4Q6P5W5 647 aa23.91■■□□□ 1.42
SNX1-210ENST00000560260 SLC24A5Q71RS6 500 aa23.91■■□□□ 1.42
SNX1-210ENST00000560260 ZNF598Q86UK7 904 aaKnown RBP23.91■■□□□ 1.42
SNX1-210ENST00000560260 SLC17A8Q8NDX2 589 aa23.91■■□□□ 1.42
SNX1-210ENST00000560260 SPATA20Q8TB22 786 aa23.91■■□□□ 1.42
SNX1-210ENST00000560260 ZBTB45Q96K62 511 aaPredicted RBP23.91■■□□□ 1.42
SNX1-210ENST00000560260 SLC9A7Q96T83 725 aa23.91■■□□□ 1.42
SNX1-210ENST00000560260 FAM105AQ9NUU6 356 aa23.91■■□□□ 1.42
SNX1-210ENST00000560260 PCDHA5Q9Y5H7 936 aa23.91■■□□□ 1.42
SNX1-210ENST00000560260 A0A0U1RQF3 1178 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 N4BP3O15049 544 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 RHOBTB3O94955 611 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 NPTXRO95502 500 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 PIGRP01833 764 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 ATP2A2P16615 1042 aaKnown RBP23.9■■□□□ 1.42
SNX1-210ENST00000560260 PROZP22891 400 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 HOXD13P35453 343 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 KCNB1Q14721 858 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 FAM117BQ6P1L5 589 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 FAM43BQ6ZT52 329 aaPredicted RBP23.9■■□□□ 1.42
SNX1-210ENST00000560260 SMG8Q8ND04 991 aaKnown RBP23.9■■□□□ 1.42
SNX1-210ENST00000560260 TOP1MTQ969P6 601 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 HVCN1Q96D96 273 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 CCDC34Q96HJ3 373 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 HAPLN2Q9GZV7 340 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 CDT1Q9H211 546 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 CLSTN2Q9H4D0 955 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 RNF19AQ9NV58 838 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 TNFSF13BQ9Y275 285 aa23.9■■□□□ 1.42
SNX1-210ENST00000560260 MEIS3P2A8K0S8 358 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 UPP2O95045 317 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 SCP2P22307 547 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 CAMK4Q16566 473 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 TMEM132AQ24JP5 1023 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 SLC27A1Q6PCB7 646 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 ZPBP2Q6X784 338 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 NPAS4Q8IUM7 802 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 HERC6Q8IVU3 1022 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 SCFD1Q8WVM8 642 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 NXF3Q9H4D5 531 aaKnown RBP23.89■■□□□ 1.42
SNX1-210ENST00000560260 GDAQ9Y2T3 454 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 PCDHB2Q9Y5E7 798 aa23.89■■□□□ 1.42
SNX1-210ENST00000560260 TRIOBPQ9H2D6 2365 aa23.89■■□□□ 1.41
SNX1-210ENST00000560260 A0A1W2PPC1 479 aa23.88■■□□□ 1.41
SNX1-210ENST00000560260 ANKRD63C9JTQ0 380 aa23.88■■□□□ 1.41
SNX1-210ENST00000560260 GATMP50440 423 aa23.88■■□□□ 1.41
SNX1-210ENST00000560260 NCBP1Q09161 790 aaKnown RBP23.88■■□□□ 1.41
SNX1-210ENST00000560260 ALCAMQ13740 583 aa23.88■■□□□ 1.41
SNX1-210ENST00000560260 PHOSPHO2Q8TCD6 241 aa23.88■■□□□ 1.41
SNX1-210ENST00000560260 LPPQ93052 612 aa23.88■■□□□ 1.41
SNX1-210ENST00000560260 RC3H2Q9HBD1 1191 aaKnown RBP23.88■■□□□ 1.41
SNX1-210ENST00000560260 TMEM161AQ9NX61 479 aa23.88■■□□□ 1.41
SNX1-210ENST00000560260 HES2Q9Y543 173 aa23.88■■□□□ 1.41
SNX1-210ENST00000560260 IPPQ9Y573 584 aa23.88■■□□□ 1.41
SNX1-210ENST00000560260 PCDHB13Q9Y5F0 798 aa23.88■■□□□ 1.41
SNX1-210ENST00000560260 EIF3DO15371 548 aaKnown RBP eCLIP23.87■■□□□ 1.41
SNX1-210ENST00000560260 ZNF623O75123 536 aa23.87■■□□□ 1.41
SNX1-210ENST00000560260 GJB5O95377 273 aa23.87■■□□□ 1.41
SNX1-210ENST00000560260 RAB27AP51159 221 aa23.87■■□□□ 1.41
SNX1-210ENST00000560260 RABGGTBP53611 331 aa23.87■■□□□ 1.41
SNX1-210ENST00000560260 CEP120Q8N960 986 aa23.87■■□□□ 1.41
SNX1-210ENST00000560260 ZNF507Q8TCN5 953 aa23.87■■□□□ 1.41
SNX1-210ENST00000560260 SMARCE1Q969G3 411 aa23.87■■□□□ 1.41
SNX1-210ENST00000560260 BICD1Q96G01 975 aa23.87■■□□□ 1.41
SNX1-210ENST00000560260 ACCSQ96QU6 501 aa23.87■■□□□ 1.41
SNX1-210ENST00000560260 RNF39Q9H2S5 420 aa23.87■■□□□ 1.41
SNX1-210ENST00000560260 ELAC1Q9H777 363 aaKnown RBP23.87■■□□□ 1.41
SNX1-210ENST00000560260 MAN1B1Q9UKM7 699 aa23.87■■□□□ 1.41
SNX1-210ENST00000560260 HNRNPDLO14979 420 aaKnown RBP23.86■■□□□ 1.41
SNX1-210ENST00000560260 TOM1L1O75674 476 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 FGFR1P11362 822 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 ABCD1P33897 745 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 LIG4P49917 911 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 PSMD2Q13200 908 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 BMT2Q1RMZ1 405 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 ZNF568Q3ZCX4 644 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 MPZL3Q6UWV2 235 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 AGMOQ6ZNB7 445 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 MRPL10Q7Z7H8 261 aaKnown RBP23.86■■□□□ 1.41
SNX1-210ENST00000560260 ZBTB33Q86T24 672 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 RNF169Q8NCN4 708 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 ANKFY1Q9P2R3 1169 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 HOOK1Q9UJC3 728 aaKnown RBP23.86■■□□□ 1.41
SNX1-210ENST00000560260 UBE4BO95155 1302 aa23.86■■□□□ 1.41
SNX1-210ENST00000560260 SMC2O95347 1197 aa23.85■■□□□ 1.41
SNX1-210ENST00000560260 MYOGP15173 224 aa23.85■■□□□ 1.41
SNX1-210ENST00000560260 PBX2P40425 430 aa23.85■■□□□ 1.41
SNX1-210ENST00000560260 DCAF4L1Q3SXM0 396 aa23.85■■□□□ 1.41
SNX1-210ENST00000560260 CLLU1OSQ5K130 101 aa23.85■■□□□ 1.41
SNX1-210ENST00000560260 NELFCDQ8IXH7 590 aa23.85■■□□□ 1.41
SNX1-210ENST00000560260 SMYD4Q8IYR2 804 aaPredicted RBP23.85■■□□□ 1.41
SNX1-210ENST00000560260 GSDMAQ96QA5 445 aa23.85■■□□□ 1.41
SNX1-210ENST00000560260 NUP62CLQ9H1M0 184 aa23.85■■□□□ 1.41
SNX1-210ENST00000560260 YBX2Q9Y2T7 364 aaKnown RBP23.85■■□□□ 1.41
SNX1-210ENST00000560260 FNDC1Q4ZHG4 1894 aaPredicted RBP23.85■■□□□ 1.41
SNX1-210ENST00000560260 DGKIO75912 1065 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 ARHGEF15O94989 841 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 MBD3O95983 291 aa23.84■■□□□ 1.41
SNX1-210ENST00000560260 HARSP12081 509 aaKnown RBP23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms