RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 SOCS4Q8WXH5 440 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 SPAG5Q96R06 1193 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 TARS2Q9BW92 718 aaKnown RBP13.79□□□□□ -0.2
USP3-213ENST00000559711 STK33Q9BYT3 514 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 TMEM117Q9H0C3 514 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 C2orf40Q9H1Z8 148 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 MYO1AQ9UBC5 1043 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 ZNF215Q9UL58 517 aaPredicted RBP13.79□□□□□ -0.2
USP3-213ENST00000559711 ABT1Q9ULW3 272 aaKnown RBP13.79□□□□□ -0.2
USP3-213ENST00000559711 GNEQ9Y223 722 aaKnown RBP13.79□□□□□ -0.2
USP3-213ENST00000559711 COQ4Q9Y3A0 265 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 BZW2Q9Y6E2 419 aaKnown RBP13.79□□□□□ -0.2
USP3-213ENST00000559711 COL1A2P08123 1366 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 A0A0B4J269 797 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 A6NJR5 290 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 ZNF233A6NK53 670 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 H3BRB1 525 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 RBAK-RBAKDNI3L0D1 243 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 ADCY6O43306 1168 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 KIF5CO60282 957 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 MSCO60682 206 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 ABL1P00519 1130 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 EDN1P05305 212 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 RFX1P22670 979 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 GTF2F1P35269 517 aaKnown RBP eCLIP13.79□□□□□ -0.2
USP3-213ENST00000559711 PRKCIP41743 596 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 GCLMP48507 274 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 POU5F1BQ06416 359 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 SPA17Q15506 151 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 ASIC2Q16515 512 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 DGKDQ16760 1214 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 ZBTB8OSQ8IWT0 167 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 RNF149Q8NC42 400 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 WDR24Q96S15 920 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 ZIC5Q96T25 663 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 HAPLN2Q9GZV7 340 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 DEF6Q9H4E7 631 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 TUT1Q9H6E5 874 aaKnown RBP13.79□□□□□ -0.2
USP3-213ENST00000559711 APEX2Q9UBZ4 518 aa13.79□□□□□ -0.2
USP3-213ENST00000559711 AJAP1Q9UKB5 411 aaPredicted RBP13.79□□□□□ -0.2
USP3-213ENST00000559711 AGO2Q9UKV8 859 aaKnown RBP13.79□□□□□ -0.2
USP3-213ENST00000559711 PLXNA1Q9UIW2 1896 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 LRRIQ3A6PVS8 624 aaPredicted RBP13.78□□□□□ -0.2
USP3-213ENST00000559711 AKR1B10O60218 316 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 LDHAP00338 332 aaKnown RBP13.78□□□□□ -0.2
USP3-213ENST00000559711 ZNF286BP0CG31 522 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 SRGAP2CP0DJJ0 459 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 KLRC1P26715 233 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 MXI1P50539 228 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 VAV2P52735 878 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 CLDN10P78369 228 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 KLHL30Q0D2K2 578 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 TFDP1Q14186 410 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 PRAMEF19Q5SWL8 479 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 KRT39Q6A163 491 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 GJB7Q6PEY0 223 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 RHPN2Q8IUC4 686 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 CCDC127Q96BQ5 260 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 ZBTB45Q96K62 511 aaPredicted RBP13.78□□□□□ -0.2
USP3-213ENST00000559711 APBA2Q99767 749 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 FAM213AQ9BRX8 229 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 MRPL4Q9BYD3 311 aaKnown RBP13.78□□□□□ -0.2
USP3-213ENST00000559711 NFKBIZQ9BYH8 718 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 IRX2Q9BZI1 471 aaPredicted RBP13.78□□□□□ -0.2
USP3-213ENST00000559711 L2HGDHQ9H9P8 463 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 TMEM8AQ9HCN3 771 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 DNAJC12Q9UKB3 198 aa13.78□□□□□ -0.2
USP3-213ENST00000559711 RCCD1A6NED2 376 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 TNPO2O14787 897 aaKnown RBP13.77□□□□□ -0.21
USP3-213ENST00000559711 CYP2B6P20813 491 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 ANXA13P27216 316 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 CASQ1P31415 396 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 STAT1P42224 750 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 CLCN3P51790 818 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 PTENP60484 403 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 CYP27A1Q02318 531 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 PSMD6Q15008 389 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 CCL14Q16627 93 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 MAPK6Q16659 721 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 TDRD12Q587J7 1177 aaKnown RBP13.77□□□□□ -0.21
USP3-213ENST00000559711 PHLDB3Q6NSJ2 640 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 CRELD2Q6UXH1 353 aaPredicted RBP13.77□□□□□ -0.21
USP3-213ENST00000559711 FMNL3Q8IVF7 1028 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 VTI1AQ96AJ9 217 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 ACO2Q99798 780 aaKnown RBP13.77□□□□□ -0.21
USP3-213ENST00000559711 FZD8Q9H461 694 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 PCDHA13Q9Y5I0 950 aa13.77□□□□□ -0.21
USP3-213ENST00000559711 F8VZ95 297 aa13.76□□□□□ -0.21
USP3-213ENST00000559711 DYNC1LI2O43237 492 aaPredicted RBP13.76□□□□□ -0.21
USP3-213ENST00000559711 KRT86O43790 486 aa13.76□□□□□ -0.21
USP3-213ENST00000559711 TOM1L1O75674 476 aa13.76□□□□□ -0.21
USP3-213ENST00000559711 PRKCBP05771 671 aa13.76□□□□□ -0.21
USP3-213ENST00000559711 FERP16591 822 aa13.76□□□□□ -0.21
USP3-213ENST00000559711 CYP2C19P33261 490 aa13.76□□□□□ -0.21
USP3-213ENST00000559711 NLRP11P59045 1033 aaKnown RBP13.76□□□□□ -0.21
USP3-213ENST00000559711 KIAA1328Q86T90 577 aa13.76□□□□□ -0.21
USP3-213ENST00000559711 IFNLR1Q8IU57 520 aaPredicted RBP13.76□□□□□ -0.21
USP3-213ENST00000559711 METTL13Q8N6R0 699 aa13.76□□□□□ -0.21
USP3-213ENST00000559711 POP1Q99575 1024 aaKnown RBP13.76□□□□□ -0.21
USP3-213ENST00000559711 MSTO1Q9BUK6 570 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms