RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 MINDY3Q9H8M7 445 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 AGO3Q9H9G7 860 aaKnown RBP10.12□□□□□ -0.79
LDLR-210ENST00000559340 ANO10Q9NW15 660 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 PIN4Q9Y237 131 aaKnown RBP10.12□□□□□ -0.79
LDLR-210ENST00000559340 TNFSF13BQ9Y275 285 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 TDRD15B5MCY1 1934 aaKnown RBP10.11□□□□□ -0.79
LDLR-210ENST00000559340 ADGRA3Q8IWK6 1321 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 CNTNAP2Q9UHC6 1331 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 A0A1B0GUA9 196 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 BICDL2A1A5D9 508 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 HNRNPDLO14979 420 aaKnown RBP10.11□□□□□ -0.79
LDLR-210ENST00000559340 CLDN3O15551 220 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 TSPAN1O60635 241 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 CSDE1O75534 798 aaKnown RBP10.11□□□□□ -0.79
LDLR-210ENST00000559340 TOM1L1O75674 476 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 EOMESO95936 686 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 LDHAP00338 332 aaKnown RBP10.11□□□□□ -0.79
LDLR-210ENST00000559340 STAG3L1P0CL83 205 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 MYBP10242 640 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 ARF4P18085 180 aaPredicted RBP10.11□□□□□ -0.79
LDLR-210ENST00000559340 RPL13P26373 211 aaKnown RBP10.11□□□□□ -0.79
LDLR-210ENST00000559340 KCNJ6P48051 423 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 NLRP12P59046 1061 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 MBTPS1Q14703 1052 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 KNOP1Q1ED39 458 aaKnown RBP10.11□□□□□ -0.79
LDLR-210ENST00000559340 ZC2HC1CQ53FD0 456 aaPredicted RBP10.11□□□□□ -0.79
LDLR-210ENST00000559340 SLC27A1Q6PCB7 646 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 SLC24A5Q71RS6 500 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 EPM2AIP1Q7L775 607 aaPredicted RBP10.11□□□□□ -0.79
LDLR-210ENST00000559340 SCFD1Q8WVM8 642 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 RSPH1Q8WYR4 309 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 PGBD4Q96DM1 585 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 ACO2Q99798 780 aaKnown RBP10.11□□□□□ -0.79
LDLR-210ENST00000559340 ADAM2Q99965 735 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 TRAIPQ9BWF2 469 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 RGS18Q9NS28 235 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 TMEM63CQ9P1W3 806 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 LRFN2Q9ULH4 789 aa10.11□□□□□ -0.79
LDLR-210ENST00000559340 MYO9BQ13459 2157 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 BIN1O00499 593 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 PDXKO00764 312 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 HOXA2O43364 376 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 ZNF623O75123 536 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 FGFR1OPO95684 399 aaKnown RBP10.1□□□□□ -0.79
LDLR-210ENST00000559340 AMHP03971 560 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 CCDC192P0DO97 292 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 MCF2P10911 925 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 GARTP22102 1010 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 FGFR4P22455 802 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 ITGB8P26012 769 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 MYBPC2Q14324 1141 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 DSC3Q14574 896 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 GPNMBQ14956 572 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 AMHR2Q16671 573 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 MPZL3Q6UWV2 235 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 KIAA0895Q8NCT3 520 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 ERCC4Q92889 916 aaPredicted RBP10.1□□□□□ -0.79
LDLR-210ENST00000559340 HPS3Q969F9 1004 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 GDF15Q99988 308 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 CCDC94Q9BW85 323 aaPredicted RBP10.1□□□□□ -0.79
LDLR-210ENST00000559340 TARS2Q9BW92 718 aaKnown RBP10.1□□□□□ -0.79
LDLR-210ENST00000559340 NAT10Q9H0A0 1025 aaKnown RBP10.1□□□□□ -0.79
LDLR-210ENST00000559340 TSPYL2Q9H2G4 693 aaPredicted RBP10.1□□□□□ -0.79
LDLR-210ENST00000559340 KIAA1586Q9HCI6 787 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 UBN1Q9NPG3 1134 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 TYW1Q9NV66 732 aaKnown RBP10.1□□□□□ -0.79
LDLR-210ENST00000559340 GDAQ9Y2T3 454 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 PCDHB7Q9Y5E2 793 aa10.1□□□□□ -0.79
LDLR-210ENST00000559340 A0A0U1RQF3 1178 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 ENPP3O14638 875 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 CAVIN2O95810 425 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 ACRP10323 421 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 CCNE1P24864 410 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 HOXA11P31270 313 aaPredicted RBP10.09□□□□□ -0.79
LDLR-210ENST00000559340 PRCPP42785 496 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 MAGEA10P43363 369 aaPredicted RBP10.09□□□□□ -0.79
LDLR-210ENST00000559340 CASP5P51878 434 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 FAM189BP81408 668 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 POU5F1Q01860 360 aaKnown RBP10.09□□□□□ -0.79
LDLR-210ENST00000559340 LRRC63Q05C16 580 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 NOLC1Q14978 699 aaKnown RBP eCLIP10.09□□□□□ -0.79
LDLR-210ENST00000559340 STX1AQ16623 288 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 ZNF568Q3ZCX4 644 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 ISM2Q6H9L7 571 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 ARMCX5Q6P1M9 558 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 FOXR2Q6PJQ5 311 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 ZNF365Q70YC5 407 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 TAS1R3Q7RTX0 852 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 NELFCDQ8IXH7 590 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 ADSSL1Q8N142 457 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 PHOSPHO2Q8TCD6 241 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 POMGNT1Q8WZA1 660 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 HERVK_113Q902F9 699 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 CPB2Q96IY4 423 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 MSTO1Q9BUK6 570 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 UBE2OQ9C0C9 1292 aaKnown RBP10.09□□□□□ -0.79
LDLR-210ENST00000559340 PDZD7Q9H5P4 517 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 ELAC1Q9H777 363 aaKnown RBP10.09□□□□□ -0.79
LDLR-210ENST00000559340 FAM105AQ9NUU6 356 aa10.09□□□□□ -0.79
LDLR-210ENST00000559340 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms