RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 RAB34Q9BZG1 259 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 TLE6Q9H808 572 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 XPNPEP1Q9NQW7 623 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 PCDHB2Q9Y5E7 798 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 CNTNAP2Q9UHC6 1331 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 KIAA1671Q9BY89 1806 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 OFD1O75665 1012 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 ERLIN2O94905 339 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 EYA4O95677 639 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 IBSPP21815 317 aaPredicted RBP11.23□□□□□ -0.61
USP3-207ENST00000558218 PRPHP41219 470 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 COASYQ13057 564 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 GIT2Q14161 759 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 NOMO2Q5JPE7 1267 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 GPIHBP1Q8IV16 184 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 SLC39A11Q8N1S5 342 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 C4orf32Q8N8J7 132 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 RNF169Q8NCN4 708 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 HELQQ8TDG4 1101 aa11.23□□□□□ -0.61
USP3-207ENST00000558218 H3BQ06 376 aaPredicted RBP11.22□□□□□ -0.61
USP3-207ENST00000558218 GPR37O15354 613 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 SRGAP2BP0DMP2 458 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 NCLP19338 710 aaKnown RBP11.22□□□□□ -0.61
USP3-207ENST00000558218 IRS1P35568 1242 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 ERVFC1P60507 584 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 SMAD4Q13485 552 aaKnown RBP11.22□□□□□ -0.61
USP3-207ENST00000558218 SMAD2Q15796 467 aaKnown RBP11.22□□□□□ -0.61
USP3-207ENST00000558218 DUSP6Q16828 381 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 RILPL1Q5EBL4 403 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 NOTUMQ6P988 496 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 EP400NLQ6ZTU2 488 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 HACE1Q8IYU2 909 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 GJD3Q8N144 294 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 MRPL43Q8N983 215 aaKnown RBP11.22□□□□□ -0.61
USP3-207ENST00000558218 URGCPQ8TCY9 931 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 PIGOQ8TEQ8 1089 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 TMX3Q96JJ7 454 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 MSLNLQ96KJ4 702 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 PRIMPOLQ96LW4 560 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 NECAB3Q96P71 396 aaPredicted RBP11.22□□□□□ -0.61
USP3-207ENST00000558218 POP1Q99575 1024 aaKnown RBP11.22□□□□□ -0.61
USP3-207ENST00000558218 IGFLR1Q9H665 355 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 MINDY3Q9H8M7 445 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 CD207Q9UJ71 328 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 TSR3Q9UJK0 312 aaKnown RBP11.22□□□□□ -0.61
USP3-207ENST00000558218 IRAK3Q9Y616 596 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 ADGRG1Q9Y653 693 aa11.22□□□□□ -0.61
USP3-207ENST00000558218 A0A1B0GUA9 196 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 INO80B-WBP1J3KQ70 363 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 INPPL1O15357 1258 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 MBTPS2O43462 519 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 MED24O75448 989 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 ALDH2P05091 517 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 IL9P15248 144 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 HOXB8P17481 243 aaPredicted RBP11.21□□□□□ -0.61
USP3-207ENST00000558218 CYP11B2P19099 503 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 GLRA2P23416 452 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 NRIP1P48552 1158 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 TOB1P50616 345 aaPredicted RBP11.21□□□□□ -0.61
USP3-207ENST00000558218 BCAR1P56945 870 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 PPP2R5AQ15172 486 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 FAM187BQ17R55 369 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 UBXN11Q5T124 520 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 AGMOQ6ZNB7 445 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 ADGRD2Q7Z7M1 963 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 DDX53Q86TM3 631 aaKnown RBP11.21□□□□□ -0.61
USP3-207ENST00000558218 ADHFE1Q8IWW8 467 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 IGSF22Q8N9C0 903 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 TMEM169Q96HH4 297 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 TBC1D32Q96NH3 1257 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 TMEM175Q9BSA9 504 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 CSRNP2Q9H175 543 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 C2orf40Q9H1Z8 148 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 RSAD1Q9HA92 442 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 TBC1D13Q9NVG8 400 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 CLEC1BQ9P126 229 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 LRWD1Q9UFC0 647 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 KCNG1Q9UIX4 513 aa11.21□□□□□ -0.61
USP3-207ENST00000558218 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.21□□□□□ -0.61
USP3-207ENST00000558218 ATG2AQ2TAZ0 1938 aa11.21□□□□□ -0.62
USP3-207ENST00000558218 PLXNA4Q9HCM2 1894 aa11.21□□□□□ -0.62
USP3-207ENST00000558218 ARID2Q68CP9 1835 aa11.21□□□□□ -0.62
USP3-207ENST00000558218 BDP1A6H8Y1 2624 aa11.21□□□□□ -0.62
USP3-207ENST00000558218 REV3LO60673 3130 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 ZMYM2Q9UBW7 1377 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 PI4K2BG5E9Z4 385 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 TSPAN1O60635 241 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 GALTP07902 379 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 ITGA4P13612 1032 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 ALADP13716 330 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 NDUFV1P49821 464 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 RNASELQ05823 741 aaKnown RBP11.2□□□□□ -0.62
USP3-207ENST00000558218 MBTD1Q05BQ5 628 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 DLX2Q07687 328 aaPredicted RBP11.2□□□□□ -0.62
USP3-207ENST00000558218 CAPSQ13938 189 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 KCNC3Q14003 757 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 SMC1AQ14683 1233 aaKnown RBP11.2□□□□□ -0.62
USP3-207ENST00000558218 DTHD1Q6ZMT9 781 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 TMC7Q7Z402 723 aa11.2□□□□□ -0.62
USP3-207ENST00000558218 SMRP1Q8NCR6 262 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms