RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 CPB2Q96IY4 423 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 PRRX2Q99811 253 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 VN1R3Q9BXE9 311 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 EMILIN2Q9BXX0 1053 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 EIF2AQ9BY44 585 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 DBR1Q9UK59 544 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 SORCS3Q9UPU3 1222 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 IPPQ9Y573 584 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 PIEZO1Q92508 2521 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 JAK2O60674 1132 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 ARL2P36404 184 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 RARRES1P49788 294 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 MRE11P49959 708 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 MBTD1Q05BQ5 628 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 MTMR3Q13615 1198 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 CAPSQ13938 189 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 IER5LQ5T953 404 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 KANK3Q6NY19 840 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 TMC5Q6UXY8 1006 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 IFNLR1Q8IU57 520 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 ASAP3Q8TDY4 903 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 PIGOQ8TEQ8 1089 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 KLHL5Q96PQ7 755 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 MTMR9Q96QG7 549 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 TRIM6Q9C030 488 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 CSRNP2Q9H175 543 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 RNF39Q9H2S5 420 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 SFXN1Q9H9B4 322 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 MRPL17Q9NRX2 175 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 PLXNA3P51805 1871 aa12.31□□□□□ -0.44
CCDC88C-213ENST00000557455 ARL5CA6NH57 179 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 POTEMA6NI47 508 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 WNT7AO00755 349 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 NR1I2O75469 434 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 SOD2P04179 222 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 CNPP09543 421 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 XRCC6P12956 609 aaKnown RBP eCLIP12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 ARF4P18085 180 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 MLH1P40692 756 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 OR1G1P47890 313 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 CLCN4P51793 760 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 PTPN5P54829 565 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 SAFBQ15424 915 aaKnown RBP eCLIP12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 COLGALT2Q8IYK4 626 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 UBALD2Q8IYN6 164 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 HACE1Q8IYU2 909 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 TDRD5Q8NAT2 981 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 PRSS33Q8NF86 280 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 GAD1Q99259 594 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 APOL6Q9BWW8 343 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 NFKBIZQ9BYH8 718 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 USTQ9Y2C2 406 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 SSX2IPQ9Y2D8 614 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 PRG3Q9Y2Y8 225 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 HES2Q9Y543 173 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 MTCL1Q9Y4B5 1905 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 ZDBF2Q9HCK1 2354 aa12.3□□□□□ -0.44
CCDC88C-213ENST00000557455 A0A087WWV3 80 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 C2CD2LO14523 706 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 INPPL1O15357 1258 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 USO1O60763 962 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 LILRB3O75022 631 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 URODP06132 367 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 ATP2B1P20020 1258 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 GLRA2P23416 452 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 MCM7P33993 719 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 SCNN1GP51170 649 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 AMHR2Q16671 573 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 ERICH6BQ5W0A0 696 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 MAEAQ7L5Y9 396 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 ZDHHC14Q8IZN3 488 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 PLCD3Q8N3E9 789 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 ACSF2Q96CM8 615 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 ZFP42Q96MM3 310 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 HERC2P3Q9BVR0 1158 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 POLR3FQ9H1D9 316 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 TMEM60Q9H2L4 133 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 MARCH5Q9NX47 278 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 MIOSQ9NXC5 875 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 LIMD1Q9UGP4 676 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 GIT1Q9Y2X7 761 aa12.29□□□□□ -0.44
CCDC88C-213ENST00000557455 LRRIQ4A6NIV6 560 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 B4GALT5O43286 388 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 NPTXRO95502 500 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 BRD1O95696 1058 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 ASGR2P07307 311 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 SPATA31C1P0DKV0 1188 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 AKAP5P24588 427 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 AVPR2P30518 371 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 GLUD2P49448 558 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 VCPP55072 806 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 GUCY1B3Q02153 619 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 DSC1Q08554 894 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 SLC27A1Q6PCB7 646 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 CCDC149Q6ZUS6 474 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 TAS1R1Q7RTX1 841 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 GPR149Q86SP6 731 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 CDR2LQ86X02 465 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 CATSPER3Q86XQ3 398 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 RPS6KC1Q96S38 1066 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms