RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-215	ENST00000554997	PSMA7	O14818	248 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	HNRNPDL	O14979	420 aa	Known RBP	11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	N4BP3	O15049	544 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	CLDN3	O15551	220 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	EDN1	P05305	212 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	CCDC192	P0DO97	292 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	SYN1	P17600	705 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	PROZ	P22891	400 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	ERCC5	P28715	1186 aa	Predicted RBP	11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	LIG4	P49917	911 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	FPGS	Q05932	587 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	TYRO3	Q06418	890 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	PPIG	Q13427	754 aa	Known RBP eCLIP	11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	IKBKE	Q14164	716 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	MYBPC2	Q14324	1141 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	NOTUM	Q6P988	496 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	CNKSR3	Q6P9H4	555 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	FOXR2	Q6PJQ5	311 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	C16orf59	Q7L2K0	433 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	DEFB128	Q7Z7B8	93 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	RTN4RL1	Q86UN2	441 aa	Predicted RBP	11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	NELFCD	Q8IXH7	590 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	GOLGA5	Q8TBA6	731 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	P2RX5	Q93086	422 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	CCDC51	Q96ER9	411 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	BICD1	Q96G01	975 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	CPB2	Q96IY4	423 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	TCHP	Q9BT92	498 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	ANP32E	Q9BTT0	268 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	FUCA2	Q9BTY2	467 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	SEMA6B	Q9H3T3	888 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	IL23A	Q9NPF7	189 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	RGS18	Q9NS28	235 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	TYW1	Q9NV66	732 aa	Known RBP	11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	DACH1	Q9UI36	760 aa		11.17	□□□□□ -0.62
SYNE2-215	ENST00000554997	TRIP12	Q14669	1992 aa	Predicted RBP	11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997		A0A0B4J269	797 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	ABHD14A-ACY1	A0A1B0GW23	586 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	CALU	O43852	315 aa	Predicted RBP	11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	MCF2	P10911	925 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	GART	P22102	1010 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	CCNE1	P24864	410 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	ADSS	P30520	456 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	FAM189B	P81408	668 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	MCL1	Q07820	350 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	STX1A	Q16623	288 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	NFIL3	Q16649	462 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	EDRF1	Q3B7T1	1238 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	DPCR1	Q3MIW9	517 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	UBXN11	Q5T124	520 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	ANKRD40	Q6AI12	368 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	SLC39A4	Q6P5W5	647 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	SLC27A1	Q6PCB7	646 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	MPZL3	Q6UWV2	235 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	HS2ST1	Q7LGA3	356 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	SLC9A9	Q8IVB4	645 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	C12orf56	Q8IXR9	622 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	ZBTB45	Q96K62	511 aa	Predicted RBP	11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	ADAM2	Q99965	735 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	LBHD1	Q9BQE6	289 aa	Predicted RBP	11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	GZF1	Q9H116	711 aa	Predicted RBP	11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	IKZF4	Q9H2S9	585 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	PDZD7	Q9H5P4	517 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	AGPAT3	Q9NRZ7	376 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	RWDD2A	Q9UIY3	292 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	PIN4	Q9Y237	131 aa	Known RBP	11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997	EVPL	Q92817	2033 aa		11.16	□□□□□ -0.62
SYNE2-215	ENST00000554997		A0A0U1RQF3	1178 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	BICDL2	A1A5D9	508 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	ABLIM1	O14639	778 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	KIAA0391	O15091	583 aa	Known RBP	11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	MGEA5	O60502	916 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	ZNF623	O75123	536 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	CAVIN2	O95810	425 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	FGB	P02675	491 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	SKI	P12755	728 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	RPL13	P26373	211 aa	Known RBP	11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	LRRC63	Q05C16	580 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	ADAM9	Q13443	819 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	KYAT1	Q16773	422 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	TMEM132A	Q24JP5	1023 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	TCTN1	Q2MV58	587 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	ZCWPW2	Q504Y3	356 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	EEF1DP3	Q658K8	133 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	TWF2	Q6IBS0	349 aa	Known RBP	11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	SLC24A5	Q71RS6	500 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	MRPL10	Q7Z7H8	261 aa	Known RBP	11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	NELFB	Q8WX92	580 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	POMGNT1	Q8WZA1	660 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	MED15	Q96RN5	788 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	ADPGK	Q9BRR6	497 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	NAT10	Q9H0A0	1025 aa	Known RBP	11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	C1orf112	Q9NSG2	853 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	DMAC2	Q9NW81	257 aa		11.15	□□□□□ -0.62
SYNE2-215	ENST00000554997	ZMYM2	Q9UBW7	1377 aa		11.15	□□□□□ -0.63
SYNE2-215	ENST00000554997	CEP290	O15078	2479 aa		11.14	□□□□□ -0.63
SYNE2-215	ENST00000554997	TISP43	B9A030	160 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms