RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 NOX5Q96PH1 765 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 GPR88Q9GZN0 384 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 NENFQ9UMX5 172 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 SAR1BQ9Y6B6 198 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 SIP14410 1827 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 BTNL10A8MVZ5 291 aa28.58■■■□□ 2.16
CCDC88C-205ENST00000553403 MOCS3O95396 460 aa28.58■■■□□ 2.16
CCDC88C-205ENST00000553403 LIG4P49917 911 aa28.58■■■□□ 2.16
CCDC88C-205ENST00000553403 BMS1Q14692 1282 aaKnown RBP28.58■■■□□ 2.16
CCDC88C-205ENST00000553403 NAB2Q15742 525 aa28.58■■■□□ 2.16
CCDC88C-205ENST00000553403 SPRYD7Q5W111 196 aa28.58■■■□□ 2.16
CCDC88C-205ENST00000553403 PHLDB3Q6NSJ2 640 aa28.58■■■□□ 2.16
CCDC88C-205ENST00000553403 ARMCX2Q7L311 632 aa28.58■■■□□ 2.16
CCDC88C-205ENST00000553403 ZNF467Q7Z7K2 595 aaPredicted RBP28.58■■■□□ 2.16
CCDC88C-205ENST00000553403 ABT1Q9ULW3 272 aaKnown RBP28.58■■■□□ 2.16
CCDC88C-205ENST00000553403 EVI5O60447 810 aa28.57■■■□□ 2.16
CCDC88C-205ENST00000553403 CHMP4BP1P59074 171 aa28.57■■■□□ 2.16
CCDC88C-205ENST00000553403 TCP11Q8WWU5 503 aa28.57■■■□□ 2.16
CCDC88C-205ENST00000553403 RABGGTAQ92696 567 aa28.57■■■□□ 2.16
CCDC88C-205ENST00000553403 TMEM8AQ9HCN3 771 aa28.57■■■□□ 2.16
CCDC88C-205ENST00000553403 COQ4Q9Y3A0 265 aa28.57■■■□□ 2.16
CCDC88C-205ENST00000553403 CAPN6Q9Y6Q1 641 aa28.57■■■□□ 2.16
CCDC88C-205ENST00000553403 LRRIQ4A6NIV6 560 aa28.56■■■□□ 2.16
CCDC88C-205ENST00000553403 K7ERI5 159 aa28.56■■■□□ 2.16
CCDC88C-205ENST00000553403 ENC1O14682 589 aa28.56■■■□□ 2.16
CCDC88C-205ENST00000553403 EXTL3O43909 919 aa28.56■■■□□ 2.16
CCDC88C-205ENST00000553403 ADORA2AP29274 412 aa28.56■■■□□ 2.16
CCDC88C-205ENST00000553403 IER5Q5VY09 327 aa28.56■■■□□ 2.16
CCDC88C-205ENST00000553403 KRT39Q6A163 491 aa28.56■■■□□ 2.16
CCDC88C-205ENST00000553403 SLFN12LQ6IEE8 588 aa28.56■■■□□ 2.16
CCDC88C-205ENST00000553403 SMARCAD1Q9H4L7 1026 aa28.56■■■□□ 2.16
CCDC88C-205ENST00000553403 VTA1Q9NP79 307 aa28.56■■■□□ 2.16
CCDC88C-205ENST00000553403 NAGPAQ9UK23 515 aa28.56■■■□□ 2.16
CCDC88C-205ENST00000553403 LRRIQ3A6PVS8 624 aaPredicted RBP28.55■■■□□ 2.16
CCDC88C-205ENST00000553403 CELF2O95319 508 aaKnown RBP28.55■■■□□ 2.16
CCDC88C-205ENST00000553403 SALL4Q9UJQ4 1053 aa28.55■■■□□ 2.16
CCDC88C-205ENST00000553403 PLXNB2O15031 1838 aa28.55■■■□□ 2.16
CCDC88C-205ENST00000553403 ZNF233A6NK53 670 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 MKRN3Q13064 507 aaKnown RBP28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 PLCB4Q15147 1175 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 KIAA0753Q2KHM9 967 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 ALKBH5Q6P6C2 394 aaKnown RBP28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 GPR161Q8N6U8 529 aaKnown RBP28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 PARK7Q99497 189 aaKnown RBP28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 JPH2Q9BR39 696 aaPredicted RBP28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 INTUQ9ULD6 942 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 IVNS1ABPQ9Y6Y0 642 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 IGKV6-21A0A0C4DH24 114 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 RBM47A0AV96 593 aaKnown RBP28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 CTAGE15A4D2H0 777 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 RRP9O43818 475 aaKnown RBP28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 ADCY3O60266 1144 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 CTAGE8P0CG41 777 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 PRLRP16471 622 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 CAPSQ13938 189 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 KIF22Q14807 665 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 TEX35Q5T0J7 233 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 CTAGE6Q86UF2 777 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 CTAGE4Q8IX94 777 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 CCDC127Q96BQ5 260 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 UBE2TQ9NPD8 197 aaPredicted RBP28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 PDGFCQ9NRA1 345 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 HDAC6Q9UBN7 1215 aa28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 PUF60Q9UHX1 559 aaKnown RBP28.54■■■□□ 2.16
CCDC88C-205ENST00000553403 PNMA6AP0CW24 399 aaPredicted RBP28.53■■■□□ 2.16
CCDC88C-205ENST00000553403 H2AFXP16104 143 aaPredicted RBP28.53■■■□□ 2.16
CCDC88C-205ENST00000553403 LAMC2Q13753 1193 aa28.53■■■□□ 2.16
CCDC88C-205ENST00000553403 ARHGEF19Q8IW93 802 aa28.53■■■□□ 2.16
CCDC88C-205ENST00000553403 SLC30A5Q8TAD4 765 aa28.53■■■□□ 2.16
CCDC88C-205ENST00000553403 COPS5Q92905 334 aa28.53■■■□□ 2.16
CCDC88C-205ENST00000553403 SYT11Q9BT88 431 aa28.53■■■□□ 2.16
CCDC88C-205ENST00000553403 MCM3APO60318 1980 aa28.53■■■□□ 2.16
CCDC88C-205ENST00000553403 DDX3XO00571 662 aaKnown RBP eCLIP28.52■■■□□ 2.164e-7■■■■□ 26.5
CCDC88C-205ENST00000553403 MARK3P27448 753 aa28.52■■■□□ 2.16
CCDC88C-205ENST00000553403 GPC3P51654 580 aa28.52■■■□□ 2.16
CCDC88C-205ENST00000553403 EFNA5P52803 228 aa28.52■■■□□ 2.16
CCDC88C-205ENST00000553403 ARHGAP44Q17R89 818 aa28.52■■■□□ 2.16
CCDC88C-205ENST00000553403 DEFB115Q30KQ5 88 aa28.52■■■□□ 2.16
CCDC88C-205ENST00000553403 TAPT1Q6NXT6 567 aa28.52■■■□□ 2.16
CCDC88C-205ENST00000553403 PSPC1Q8WXF1 523 aaKnown RBP28.52■■■□□ 2.16
CCDC88C-205ENST00000553403 FAM213AQ9BRX8 229 aa28.52■■■□□ 2.16
CCDC88C-205ENST00000553403 PDCL3Q9H2J4 239 aa28.52■■■□□ 2.16
CCDC88C-205ENST00000553403 PLXNA1Q9UIW2 1896 aa28.52■■■□□ 2.16
CCDC88C-205ENST00000553403 ZBTB42B2RXF5 422 aa28.51■■■□□ 2.16
CCDC88C-205ENST00000553403 HBP1O60381 514 aa28.51■■■□□ 2.16
CCDC88C-205ENST00000553403 LDHAP00338 332 aaKnown RBP28.51■■■□□ 2.16
CCDC88C-205ENST00000553403 KLRC1P26715 233 aa28.51■■■□□ 2.16
CCDC88C-205ENST00000553403 MAP2K1Q02750 393 aaPredicted RBP28.51■■■□□ 2.16
CCDC88C-205ENST00000553403 CKAP4Q07065 602 aaKnown RBP28.51■■■□□ 2.16
CCDC88C-205ENST00000553403 MXD4Q14582 209 aaPredicted RBP28.51■■■□□ 2.16
CCDC88C-205ENST00000553403 TRIM50Q86XT4 487 aa28.51■■■□□ 2.16
CCDC88C-205ENST00000553403 AGO2Q9UKV8 859 aaKnown RBP28.51■■■□□ 2.16
CCDC88C-205ENST00000553403 SNX12Q9UMY4 172 aa28.51■■■□□ 2.16
CCDC88C-205ENST00000553403 ARHGAP1Q07960 439 aa28.51■■■□□ 2.15
CCDC88C-205ENST00000553403 PSMD6Q15008 389 aa28.51■■■□□ 2.15
CCDC88C-205ENST00000553403 FBXO38Q6PIJ6 1188 aa28.51■■■□□ 2.15
CCDC88C-205ENST00000553403 OLIG1Q8TAK6 271 aa28.51■■■□□ 2.15
CCDC88C-205ENST00000553403 PRPF31Q8WWY3 499 aaKnown RBP28.51■■■□□ 2.15
CCDC88C-205ENST00000553403 PACSIN1Q9BY11 444 aa28.51■■■□□ 2.15
CCDC88C-205ENST00000553403 TSKSQ9UJT2 592 aa28.51■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms