RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 GPR182O15218 404 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 FAM189A1O60320 539 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 TSPAN1O60635 241 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 FGFR1OPO95684 399 aaKnown RBP10.49□□□□□ -0.73
LIMA1-211ENST00000552338 GNA14O95837 355 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 LDHAP00338 332 aaKnown RBP10.49□□□□□ -0.73
LIMA1-211ENST00000552338 CXCL10P02778 98 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 SELPP16109 830 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 ARF4P18085 180 aaPredicted RBP10.49□□□□□ -0.73
LIMA1-211ENST00000552338 SFPQP23246 707 aaKnown RBP eCLIP10.49□□□□□ -0.73
LIMA1-211ENST00000552338 RPL13P26373 211 aaKnown RBP10.49□□□□□ -0.73
LIMA1-211ENST00000552338 TLE2Q04725 743 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 GPNMBQ14956 572 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 KYAT1Q16773 422 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 LRRC26Q2I0M4 334 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 TRIM60Q495X7 471 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 CDKAL1Q5VV42 579 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 FAM228AQ86W67 206 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 IRF2BP1Q8IU81 584 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 BORCS6Q96GS4 357 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 OSMRQ99650 979 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 TSG101Q99816 390 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 NOC4LQ9BVI4 516 aaKnown RBP10.49□□□□□ -0.73
LIMA1-211ENST00000552338 KIAA1586Q9HCI6 787 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 ERVK-5Q9HDB9 667 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 AGPAT5Q9NUQ2 364 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 MAPK8IP1Q9UQF2 711 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 NOD1Q9Y239 953 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 SCN5AQ14524 2016 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 RALGAPA2Q2PPJ7 1873 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 TTC3P53804 2025 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 TRIM49BA6NDI0 452 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 ANKRD63C9JTQ0 380 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 INO80B-WBP1J3KQ70 363 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 CLTBP09497 229 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 THPOP40225 353 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 CHMP4BP1P59074 171 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 ADAM9Q13443 819 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 PRPF4BQ13523 1007 aaKnown RBP10.48□□□□□ -0.73
LIMA1-211ENST00000552338 DSC3Q14574 896 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 LPIN1Q14693 890 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 MBTPS1Q14703 1052 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 COL13A1Q5TAT6 717 aaPredicted RBP10.48□□□□□ -0.73
LIMA1-211ENST00000552338 MPZL3Q6UWV2 235 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 LRRC8DQ7L1W4 858 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 NELFCDQ8IXH7 590 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 PIP4P2Q8N4L2 257 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 ABHD8Q96I13 439 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 TARS2Q9BW92 718 aaKnown RBP10.48□□□□□ -0.73
LIMA1-211ENST00000552338 RBSNQ9H1K0 784 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 CTNND2Q9UQB3 1225 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 NOC2LQ9Y3T9 749 aaKnown RBP10.48□□□□□ -0.73
LIMA1-211ENST00000552338 NFE2L3Q9Y4A8 694 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 LTBP2Q14767 1821 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 MICAL3Q7RTP6 2002 aa10.48□□□□□ -0.73
LIMA1-211ENST00000552338 TTLL13PA6NNM8 815 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 HNRNPDLO14979 420 aaKnown RBP10.47□□□□□ -0.73
LIMA1-211ENST00000552338 N4BP3O15049 544 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 CETN3O15182 167 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 PMM2O15305 246 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 SLC16A3O15427 465 aaKnown RBP10.47□□□□□ -0.73
LIMA1-211ENST00000552338 CLDN3O15551 220 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 ZNF623O75123 536 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 RPS6KA5O75582 802 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 NR3C1P04150 777 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 MCF2P10911 925 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 EEF1GP26641 437 aaKnown RBP10.47□□□□□ -0.73
LIMA1-211ENST00000552338 RFC2P35250 354 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 LIG4P49917 911 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 CLDN10P78369 228 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 SPAG1Q07617 926 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 NCBP1Q09161 790 aaKnown RBP10.47□□□□□ -0.73
LIMA1-211ENST00000552338 TMEM62Q0P6H9 643 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 PLEKHG4Q58EX7 1191 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 ATF7IP2Q5U623 682 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 KLHL10Q6JEL2 608 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 NOTUMQ6P988 496 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 CRELD2Q6UXH1 353 aaPredicted RBP10.47□□□□□ -0.73
LIMA1-211ENST00000552338 APTXQ7Z2E3 356 aaKnown RBP10.47□□□□□ -0.73
LIMA1-211ENST00000552338 FRMD5Q7Z6J6 570 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 SYCP3Q8IZU3 236 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 CSGALNACT2Q8N6G5 542 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 XXYLT1Q8NBI6 393 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 APBB2Q92870 758 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 MFSD14AQ96MC6 490 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 TSPAN18Q96SJ8 248 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 SRRTQ9BXP5 876 aaKnown RBP10.47□□□□□ -0.73
LIMA1-211ENST00000552338 HAPLN2Q9GZV7 340 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 AGO3Q9H9G7 860 aaKnown RBP10.47□□□□□ -0.73
LIMA1-211ENST00000552338 METTL14Q9HCE5 456 aaKnown RBP10.47□□□□□ -0.73
LIMA1-211ENST00000552338 ST3GAL5Q9UNP4 418 aa10.47□□□□□ -0.73
LIMA1-211ENST00000552338 BECN2A8MW95 431 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 OGTO15294 1046 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 B4GALT5O43286 388 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 EXTL3O43909 919 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 PQBP1O60828 265 aaKnown RBP10.46□□□□□ -0.73
LIMA1-211ENST00000552338 ERLIN2O94905 339 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 TIMP1P01033 207 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 NR2F2P24468 414 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 PSMC2P35998 433 aaKnown RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms