RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 TISP43B9A030 160 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 PIGRP01833 764 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 LIG4P49917 911 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 BMT2Q1RMZ1 405 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 SLC39A4Q6P5W5 647 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 ZPBP2Q6X784 338 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 SYCP3Q8IZU3 236 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 TRIML1Q8N9V2 468 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 ZBTB45Q96K62 511 aaPredicted RBP23.23■■□□□ 1.31
VPS29-206ENST00000549578 TSPYL2Q9H2G4 693 aaPredicted RBP23.23■■□□□ 1.31
VPS29-206ENST00000549578 TMEM206Q9H813 350 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 EXOC7Q9UPT5 735 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 TNFSF13BQ9Y275 285 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 ANKRD63C9JTQ0 380 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 ACTN1P12814 892 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 IBSPP21815 317 aaPredicted RBP23.23■■□□□ 1.31
VPS29-206ENST00000549578 PRCPP42785 496 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 UBXN11Q5T124 520 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 GDF15Q99988 308 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 EIF2AQ9BY44 585 aaKnown RBP23.23■■□□□ 1.31
VPS29-206ENST00000549578 RGS18Q9NS28 235 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 ANKFY1Q9P2R3 1169 aa23.23■■□□□ 1.31
VPS29-206ENST00000549578 ABHD14A-ACY1A0A1B0GW23 586 aa23.22■■□□□ 1.31
VPS29-206ENST00000549578 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.22■■□□□ 1.31
VPS29-206ENST00000549578 ENPP3O14638 875 aa23.22■■□□□ 1.31
VPS29-206ENST00000549578 N4BP3O15049 544 aa23.22■■□□□ 1.31
VPS29-206ENST00000549578 SLC27A1Q6PCB7 646 aa23.22■■□□□ 1.31
VPS29-206ENST00000549578 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.22■■□□□ 1.314e-10■■■■□ 25.2
VPS29-206ENST00000549578 GUF1Q8N442 669 aaKnown RBP23.22■■□□□ 1.31
VPS29-206ENST00000549578 CCDC51Q96ER9 411 aa23.22■■□□□ 1.31
VPS29-206ENST00000549578 PTPRHQ9HD43 1115 aa23.22■■□□□ 1.31
VPS29-206ENST00000549578 ZBBXA8MT70 800 aa23.21■■□□□ 1.31
VPS29-206ENST00000549578 ABLIM1O14639 778 aa23.21■■□□□ 1.31
VPS29-206ENST00000549578 TOM1L1O75674 476 aa23.21■■□□□ 1.31
VPS29-206ENST00000549578 NPTXRO95502 500 aa23.21■■□□□ 1.31
VPS29-206ENST00000549578 PROZP22891 400 aa23.21■■□□□ 1.31
VPS29-206ENST00000549578 KNOP1Q1ED39 458 aaKnown RBP23.21■■□□□ 1.31
VPS29-206ENST00000549578 ZNF568Q3ZCX4 644 aa23.21■■□□□ 1.31
VPS29-206ENST00000549578 ZBTB33Q86T24 672 aa23.21■■□□□ 1.31
VPS29-206ENST00000549578 TCHPQ9BT92 498 aa23.21■■□□□ 1.31
VPS29-206ENST00000549578 GTPBP4Q9BZE4 634 aaKnown RBP23.21■■□□□ 1.31
VPS29-206ENST00000549578 BAIAP3O94812 1187 aa23.2■■□□□ 1.3
VPS29-206ENST00000549578 HARSP12081 509 aaKnown RBP23.2■■□□□ 1.3
VPS29-206ENST00000549578 CD44P16070 742 aaKnown RBP23.2■■□□□ 1.3
VPS29-206ENST00000549578 MATR3P43243 847 aaKnown RBP eCLIP23.2■■□□□ 1.3
VPS29-206ENST00000549578 C9orf50Q5SZB4 431 aa23.2■■□□□ 1.3
VPS29-206ENST00000549578 MPZL3Q6UWV2 235 aa23.2■■□□□ 1.3
VPS29-206ENST00000549578 SLC24A5Q71RS6 500 aa23.2■■□□□ 1.3
VPS29-206ENST00000549578 ADPGKQ9BRR6 497 aa23.2■■□□□ 1.3
VPS29-206ENST00000549578 UBE2OQ9C0C9 1292 aaKnown RBP23.2■■□□□ 1.3
VPS29-206ENST00000549578 HAPLN2Q9GZV7 340 aa23.2■■□□□ 1.3
VPS29-206ENST00000549578 GBP3Q9H0R5 595 aa23.2■■□□□ 1.3
VPS29-206ENST00000549578 CDT1Q9H211 546 aa23.2■■□□□ 1.3
VPS29-206ENST00000549578 KCTD10Q9H3F6 313 aa23.2■■□□□ 1.3
VPS29-206ENST00000549578 FAM105AQ9NUU6 356 aa23.2■■□□□ 1.3
VPS29-206ENST00000549578 CXXC1Q9P0U4 656 aaPredicted RBP23.2■■□□□ 1.3
VPS29-206ENST00000549578 C9IYK1 514 aa23.19■■□□□ 1.3
VPS29-206ENST00000549578 CLDN3O15551 220 aa23.19■■□□□ 1.3
VPS29-206ENST00000549578 TGFB1I1O43294 461 aa23.19■■□□□ 1.3
VPS29-206ENST00000549578 KIF20AO95235 890 aa23.19■■□□□ 1.3
VPS29-206ENST00000549578 WDR5P61964 334 aaKnown RBP23.19■■□□□ 1.3
VPS29-206ENST00000549578 COBLL1Q53SF7 1204 aa23.19■■□□□ 1.3
VPS29-206ENST00000549578 ADSSL1Q8N142 457 aa23.19■■□□□ 1.3
VPS29-206ENST00000549578 HERVK_113Q902F9 699 aa23.19■■□□□ 1.3
VPS29-206ENST00000549578 TRAIPQ9BWF2 469 aa23.19■■□□□ 1.3
VPS29-206ENST00000549578 TRIM6Q9C030 488 aaPredicted RBP23.19■■□□□ 1.3
VPS29-206ENST00000549578 C1orf112Q9NSG2 853 aa23.19■■□□□ 1.3
VPS29-206ENST00000549578 PCDHB2Q9Y5E7 798 aa23.19■■□□□ 1.3
VPS29-206ENST00000549578 A0A0U1RQF3 1178 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 PPP1R3GB7ZBB8 358 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 EFCAB14O75071 495 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 ADSSP30520 456 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 DEFB103AP81534 67 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 NOLC1Q14978 699 aaKnown RBP eCLIP23.18■■□□□ 1.3
VPS29-206ENST00000549578 DPCR1Q3MIW9 517 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 FAM43BQ6ZT52 329 aaPredicted RBP23.18■■□□□ 1.3
VPS29-206ENST00000549578 HES2Q9Y543 173 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 RANBP2P49792 3224 aaKnown RBP23.18■■□□□ 1.3
VPS29-206ENST00000549578 KCNJ6P48051 423 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 NLRP12P59046 1061 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 MCL1Q07820 350 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 SHHQ15465 462 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 DCAF4L1Q3SXM0 396 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 KLHL10Q6JEL2 608 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 HS2ST1Q7LGA3 356 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 ECHDC2Q86YB7 292 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 CEP120Q8N960 986 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 POMGNT1Q8WZA1 660 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 CBWD1Q9BRT8 395 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 SEMA6BQ9H3T3 888 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 NXF3Q9H4D5 531 aaKnown RBP23.18■■□□□ 1.3
VPS29-206ENST00000549578 AGPAT3Q9NRZ7 376 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 IPPQ9Y573 584 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 STYXL1Q9Y6J8 313 aa23.18■■□□□ 1.3
VPS29-206ENST00000549578 A0A0B4J269 797 aa23.17■■□□□ 1.3
VPS29-206ENST00000549578 CLIC2O15247 247 aa23.17■■□□□ 1.3
VPS29-206ENST00000549578 MCF2P10911 925 aa23.17■■□□□ 1.3
VPS29-206ENST00000549578 ATF7P17544 494 aaPredicted RBP23.17■■□□□ 1.3
VPS29-206ENST00000549578 FAM189BP81408 668 aa23.17■■□□□ 1.3
VPS29-206ENST00000549578 STIM1Q13586 685 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms