RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 MRFAP1L1Q96HT8 127 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 RHOVQ96L33 236 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 PNMA5Q96PV4 448 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 HHIPQ96QV1 700 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 TMEM47Q9BQJ4 181 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 NAPBQ9H115 298 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 POMKQ9H5K3 350 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 EHMT1Q9H9B1 1298 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 UBP1Q9NZI7 540 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 FAM187AA6NFU0 413 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 EIF3JO75822 258 aaKnown RBP7.54□□□□□ -1.2
LIMA1-204ENST00000549064 PSAPP07602 524 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 GOLGA8HP0CJ92 632 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 MYCLP12524 364 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-204ENST00000549064 AOC1P19801 751 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 UBA1P22314 1058 aaKnown RBP7.54□□□□□ -1.2
LIMA1-204ENST00000549064 ZNF543Q08ER8 600 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 MGAT3Q09327 533 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 APOBRQ0VD83 1088 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 HYAL2Q12891 473 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 COL9A2Q14055 689 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-204ENST00000549064 SNAP47Q5SQN1 464 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 PLPP4Q5VZY2 271 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 TSHZ3Q63HK5 1081 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 EGFLAMQ63HQ2 1017 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 ANKS3Q6ZW76 656 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 RAB44Q7Z6P3 723 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-204ENST00000549064 RTN4RL1Q86UN2 441 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-204ENST00000549064 SIRT2Q8IXJ6 389 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 CRIPAKQ8N1N5 446 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 DTWD2Q8NBA8 298 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 CYP2W1Q8TAV3 490 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 LMBR1Q8WVP7 490 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 RIN2Q8WYP3 895 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-204ENST00000549064 ZFP42Q96MM3 310 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 NSUN5Q96P11 429 aaKnown RBP7.54□□□□□ -1.2
LIMA1-204ENST00000549064 IWS1Q96ST2 819 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 NT5C1AQ9BXI3 368 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 UBA5Q9GZZ9 404 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 AGO3Q9H9G7 860 aaKnown RBP7.54□□□□□ -1.2
LIMA1-204ENST00000549064 PXMP2Q9NR77 195 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 HCN2Q9UL51 889 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 NR2E1Q9Y466 385 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 TELO2Q9Y4R8 837 aa7.54□□□□□ -1.2
LIMA1-204ENST00000549064 DENND4AQ7Z401 1863 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 USP24Q9UPU5 2620 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 FOXP2O15409 715 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 KIF4AO95239 1232 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 TOP1P11387 765 aaKnown RBP7.53□□□□□ -1.2
LIMA1-204ENST00000549064 SOX9P48436 509 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 ADAM17P78536 824 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 MMRN1Q13201 1228 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 TCEAL1Q15170 157 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 CDC37Q16543 378 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-204ENST00000549064 RRP12Q5JTH9 1297 aaKnown RBP7.53□□□□□ -1.2
LIMA1-204ENST00000549064 FBXO47Q5MNV8 452 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 FIGNL1Q6PIW4 674 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 TMEM184AQ6ZMB5 413 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 GOLM1Q8NBJ4 401 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 IL31RAQ8NI17 732 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 FEZF2Q8TBJ5 459 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 PANK1Q8TE04 598 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 HNRNPLLQ8WVV9 542 aaKnown RBP7.53□□□□□ -1.2
LIMA1-204ENST00000549064 ANAPC16Q96DE5 110 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 NACAP1Q9BZK3 213 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 MLXIPQ9HAP2 919 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 TOMM22Q9NS69 142 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 PNMA2Q9UL42 364 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 PCDHGC4Q9Y5F7 938 aa7.53□□□□□ -1.2
LIMA1-204ENST00000549064 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-204ENST00000549064 ABCB11O95342 1321 aa7.52□□□□□ -1.2
LIMA1-204ENST00000549064 CCDC171Q6TFL3 1326 aa7.52□□□□□ -1.2
LIMA1-204ENST00000549064 CHD6Q8TD26 2715 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 HIDE1A8MVS5 230 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 FSCN2O14926 492 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 GREM1O60565 184 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 RAB11FIP3O75154 756 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 FGF18O76093 207 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 CFBP00751 764 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 MAPTP10636 758 aaKnown RBP7.52□□□□□ -1.21
LIMA1-204ENST00000549064 CD52P31358 61 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 TNP2Q05952 138 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 SPEM2Q0P670 501 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 CAMK2GQ13555 558 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-204ENST00000549064 SPOUT1Q5T280 376 aaKnown RBP7.52□□□□□ -1.21
LIMA1-204ENST00000549064 UTP14CQ5TAP6 766 aaKnown RBP7.52□□□□□ -1.21
LIMA1-204ENST00000549064 KANK3Q6NY19 840 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 CPLX3Q8WVH0 158 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 BHMTQ93088 406 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 CDCA3Q99618 268 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-204ENST00000549064 SLC30A3Q99726 388 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 PDCD2LQ9BRP1 358 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 CEP44Q9C0F1 390 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 ERVK-5Q9HDB9 667 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 DZANK1Q9NVP4 752 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 TMEM260Q9NX78 707 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 CDY2AQ9Y6F7 541 aa7.52□□□□□ -1.21
LIMA1-204ENST00000549064 CHD8Q9HCK8 2581 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 ATRXP46100 2492 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 GPR179Q6PRD1 2367 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms