RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 MKRN4PQ13434 485 aaPredicted RBP12.01□□□□□ -0.49
CUX1-212ENST00000547394 HSDL1Q3SXM5 330 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 MIS18BP1Q6P0N0 1132 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 SLC9A9Q8IVB4 645 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 MAP4K3Q8IVH8 894 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 TEX2Q8IWB9 1127 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 RPUSD2Q8IZ73 545 aaKnown RBP12.01□□□□□ -0.49
CUX1-212ENST00000547394 TPCN2Q8NHX9 752 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 SLC35G2Q8TBE7 412 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 TARS2Q9BW92 718 aaKnown RBP12.01□□□□□ -0.49
CUX1-212ENST00000547394 ATP6V0A4Q9HBG4 840 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 COG5Q9UP83 839 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 PCDHGC5Q9Y5F6 944 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 BUB1BO60566 1050 aaPredicted RBP12□□□□□ -0.49
CUX1-212ENST00000547394 TCP1P17987 556 aaKnown RBP12□□□□□ -0.49
CUX1-212ENST00000547394 PRPF4BQ13523 1007 aaKnown RBP12□□□□□ -0.49
CUX1-212ENST00000547394 NFIL3Q16649 462 aa12□□□□□ -0.49
CUX1-212ENST00000547394 NOL9Q5SY16 702 aaKnown RBP12□□□□□ -0.49
CUX1-212ENST00000547394 LLGL2Q6P1M3 1020 aa12□□□□□ -0.49
CUX1-212ENST00000547394 VPS36Q86VN1 386 aa12□□□□□ -0.49
CUX1-212ENST00000547394 RNF10Q8N5U6 811 aaKnown RBP12□□□□□ -0.49
CUX1-212ENST00000547394 SLC30A5Q8TAD4 765 aa12□□□□□ -0.49
CUX1-212ENST00000547394 PARD3BQ8TEW8 1205 aa12□□□□□ -0.49
CUX1-212ENST00000547394 IFT81Q8WYA0 676 aa12□□□□□ -0.49
CUX1-212ENST00000547394 OPTNQ96CV9 577 aa12□□□□□ -0.49
CUX1-212ENST00000547394 PCDHB18PQ96TA0 734 aa12□□□□□ -0.49
CUX1-212ENST00000547394 PDGFCQ9NRA1 345 aa12□□□□□ -0.49
CUX1-212ENST00000547394 PTPRJQ12913 1337 aa12□□□□□ -0.49
CUX1-212ENST00000547394 GSTTP1A0A1W2PQM5 241 aa12□□□□□ -0.49
CUX1-212ENST00000547394 EIF3JO75822 258 aaKnown RBP12□□□□□ -0.49
CUX1-212ENST00000547394 GLI1P08151 1106 aa12□□□□□ -0.49
CUX1-212ENST00000547394 ITGA4P13612 1032 aa12□□□□□ -0.49
CUX1-212ENST00000547394 PAFAH1B1P43034 410 aa12□□□□□ -0.49
CUX1-212ENST00000547394 RPS6KA1Q15418 735 aa12□□□□□ -0.49
CUX1-212ENST00000547394 ZBTB33Q86T24 672 aa12□□□□□ -0.49
CUX1-212ENST00000547394 NOP9Q86U38 636 aaKnown RBP12□□□□□ -0.49
CUX1-212ENST00000547394 ERLIN1O75477 346 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 CNMDO75829 334 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 DGAT1O75907 488 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 MMEP08473 750 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 SRGAP2CP0DJJ0 459 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 KRT5P13647 590 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 GLRA2P23416 452 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 TCF7P36402 384 aaPredicted RBP11.99□□□□□ -0.49
CUX1-212ENST00000547394 LIG4P49917 911 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 SV2AQ7L0J3 742 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 ZNF771Q7L3S4 317 aaPredicted RBP11.99□□□□□ -0.49
CUX1-212ENST00000547394 PEX26Q7Z412 305 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 METTL13Q8N6R0 699 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 LRRC57Q8N9N7 239 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 GLG1Q92896 1179 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 FAM212AQ96EL1 285 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 PORCNQ9H237 461 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 BZW2Q9Y6E2 419 aaKnown RBP11.99□□□□□ -0.49
CUX1-212ENST00000547394 ATP2A1O14983 1001 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 FARP2O94887 1054 aaPredicted RBP11.99□□□□□ -0.49
CUX1-212ENST00000547394 OATP04181 439 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 IREB2P48200 963 aaKnown RBP11.99□□□□□ -0.49
CUX1-212ENST00000547394 SH3D19Q5HYK7 790 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 C8orf74Q6P047 294 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 HDXQ7Z353 690 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 ZNF516Q92618 1163 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 KIFAP3Q92845 792 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 IFT74Q96LB3 600 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 AGPAT1Q99943 283 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 EFCC1Q9HA90 598 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 RBPJLQ9UBG7 517 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 FBXO40Q9UH90 709 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 NR2E1Q9Y466 385 aa11.99□□□□□ -0.49
CUX1-212ENST00000547394 MAP2K7O14733 419 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 KIF4AO95239 1232 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 FTLP02792 175 aaPredicted RBP11.98□□□□□ -0.49
CUX1-212ENST00000547394 TNNI1P19237 187 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 GJA5P36382 358 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 MARCKSL1P49006 195 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 OSTNP61366 133 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 GUCY2DQ02846 1103 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 CFAP221Q4G0U5 840 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 XKR3Q5GH77 459 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 SND1Q7KZF4 910 aaKnown RBP eCLIP11.98□□□□□ -0.49
CUX1-212ENST00000547394 TAF4BQ92750 862 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 PDLIM7Q9NR12 457 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 VPS18Q9P253 973 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 LCTP09848 1927 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 CARSP49589 748 aaKnown RBP11.98□□□□□ -0.49
CUX1-212ENST00000547394 GUCY2FP51841 1108 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 IGBP1P78318 339 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 CYP24A1Q07973 514 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 CETN1Q12798 172 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 TERF2Q15554 542 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 DAB2IPQ5VWQ8 1189 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 XRRA1Q6P2D8 792 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 DDX42Q86XP3 938 aaKnown RBP eCLIP11.98□□□□□ -0.49
CUX1-212ENST00000547394 CTNNBL1Q8WYA6 563 aaPredicted RBP11.98□□□□□ -0.49
CUX1-212ENST00000547394 SYT11Q9BT88 431 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 SELENOOQ9BVL4 669 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 DDX47Q9H0S4 455 aaKnown RBP11.98□□□□□ -0.49
CUX1-212ENST00000547394 FBXL5Q9UKA1 691 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 NENFQ9UMX5 172 aa11.98□□□□□ -0.49
CUX1-212ENST00000547394 PPP2R3BQ9Y5P8 575 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms