RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 PRPSAP2O60256 369 aa9.2□□□□□ -0.94
CLIP1-218ENST00000545889 ADCY1Q08828 1119 aa9.2□□□□□ -0.94
CLIP1-218ENST00000545889 MORC3Q14149 939 aa9.2□□□□□ -0.94
CLIP1-218ENST00000545889 DPCR1Q3MIW9 517 aa9.2□□□□□ -0.94
CLIP1-218ENST00000545889 ZNF394Q53GI3 561 aa9.2□□□□□ -0.94
CLIP1-218ENST00000545889 SDE2Q6IQ49 451 aa9.2□□□□□ -0.94
CLIP1-218ENST00000545889 TTC23LQ6PF05 361 aa9.2□□□□□ -0.94
CLIP1-218ENST00000545889 USP50Q70EL3 339 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-218ENST00000545889 CDKL2Q92772 493 aa9.2□□□□□ -0.94
CLIP1-218ENST00000545889 XPO4Q9C0E2 1151 aaKnown RBP9.2□□□□□ -0.94
CLIP1-218ENST00000545889 NFIBO00712 420 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 TUBBP07437 444 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 GBP1P32455 592 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 SEPT1Q8WYJ6 367 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 TRIM11Q96F44 468 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 ASIC4Q96FT7 647 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 GMLQ99445 158 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 RIOX1Q9H6W3 641 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 ABCB6Q9NP58 842 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 NMRK2Q9NPI5 230 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 EMILIN3Q9NT22 766 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 PSD3Q9NYI0 1048 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 LSM7Q9UK45 103 aaKnown RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 PCDHA10Q9Y5I2 948 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 PAPPAQ13219 1627 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 PMLP29590 882 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 ADCY8P40145 1251 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 RPS6P62753 249 aaKnown RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 PPP1R2P3Q6NXS1 205 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 PADI6Q6TGC4 694 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 SH3TC2Q8TF17 1288 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 HDAC11Q96DB2 347 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 GMCL1Q96IK5 515 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 SLC9A2Q9UBY0 812 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 I3L4J1 428 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 P4HBP07237 508 aaKnown RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 CYP2C9P11712 490 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 ALDH7A1P49419 539 aaKnown RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 PRELPP51888 382 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 TKFCQ3LXA3 575 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 PPP1R18Q6NYC8 613 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 TATDN1Q6P1N9 297 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 YME1L1Q96TA2 773 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 NAPGQ99747 312 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 TRIM56Q9BRZ2 755 aaKnown RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 CAPS2Q9BXY5 557 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 SMARCAD1Q9H4L7 1026 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 TAF1DQ9H5J8 278 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 TRPC7Q9HCX4 862 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 FAM8A1Q9UBU6 413 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 CPA4Q9UI42 421 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 POTEB3A0JP26 581 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 MANSC4A6NHS7 340 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 SFI1A8K8P3 1242 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 POTECB2RU33 542 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 SMIM24O75264 130 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 FGRP09769 529 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 SUPT20HL2P0C7V6 817 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 ATP1A2P50993 1020 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 CYP27A1Q02318 531 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 MAP7Q14244 749 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 CASP8Q14790 479 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 POTEBQ6S5H4 581 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 NYAP1Q6ZVC0 841 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 PCSK9Q8NBP7 692 aaKnown RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 RNF149Q8NC42 400 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 ANKS1AQ92625 1134 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 FAM20AQ96MK3 541 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 RAB3IPQ96QF0 476 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 KIAA1586Q9HCI6 787 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 STARD7Q9NQZ5 370 aa9.19□□□□□ -0.94
CLIP1-218ENST00000545889 BZW2Q9Y6E2 419 aaKnown RBP9.19□□□□□ -0.94
CLIP1-218ENST00000545889 APOEP02649 317 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 TOB1P50616 345 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-218ENST00000545889 PSMC5P62195 406 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 BFSP2Q13515 415 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 SEPT6Q14141 434 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 MESDQ14696 234 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 PTPROQ16827 1216 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 RESP18Q5W5W9 173 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 ARL6IP4Q66PJ3 421 aaKnown RBP9.18□□□□□ -0.94
CLIP1-218ENST00000545889 HAUS6Q7Z4H7 955 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 REXO1L1PQ8IX06 675 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 E9PMD0 336 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 TADA3O75528 432 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 ZNF280AP59817 542 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-218ENST00000545889 ATP2C1P98194 919 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-218ENST00000545889 PDE1BQ01064 536 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 FMR1Q06787 632 aaKnown RBP eCLIP9.18□□□□□ -0.944e-6■■■■□ 21.6
CLIP1-218ENST00000545889 IFT88Q13099 833 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 CFAP221Q4G0U5 840 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 FYB2Q5VWT5 728 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 C11orf57Q6ZUT1 292 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-218ENST00000545889 PLEKHH3Q7Z736 793 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 GMCL1P1Q8NEA9 526 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 P3H4Q92791 437 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 ZNF560Q96MR9 790 aa9.18□□□□□ -0.94
CLIP1-218ENST00000545889 TAAR1Q96RJ0 339 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms