RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 OPLAHO14841 1288 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 ZNF185O15231 689 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 AGTP01019 485 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 RARAP10276 462 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 IDO1P14902 403 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 CPA3P15088 417 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 CARSP49589 748 aaKnown RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 GNAQP50148 359 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 COPS2P61201 443 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 KLC1Q07866 573 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 ASTE1Q2TB18 679 aaPredicted RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 HHATQ5VTY9 493 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 RNF43Q68DV7 783 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 OTUD7BQ6GQQ9 843 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 USP17L2Q6R6M4 530 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 AGGF1Q8N302 714 aaeCLIP5.67□□□□□ -1.5
USP28-213ENST00000544967 FBF1Q8TES7 1133 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 SCFD2Q8WU76 684 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 NELFBQ8WX92 580 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 MAML3Q96JK9 1138 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 MTRQ99707 1265 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 TRIM4Q9C037 500 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 RBM12Q9NTZ6 932 aaKnown RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 LMCD1Q9NZU5 365 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 BLOC1S6Q9UL45 172 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 NFU1Q9UMS0 254 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 CTNND2Q9UQB3 1225 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 LZTS1Q9Y250 596 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 BTBD19C9JJ37 291 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 SMIM22K7EJ46 135 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 WDR46O15213 610 aaKnown RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 GPR37O15354 613 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 DIAPH2O60879 1101 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 SMIM24O75264 130 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 RNASEH2AO75792 299 aaKnown RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 CNMDO75829 334 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 EYA4O95677 639 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 GNRH1P01148 92 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 GLI1P08151 1106 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 FDX1P10109 184 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 RBP3P10745 1247 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 AKR1B1P15121 316 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 ATICP31939 592 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 MAN1A1P33908 653 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 DRG2P55039 364 aaKnown RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 POU5F1BQ06416 359 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 ABCB5Q2M3G0 1257 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 THEMIS2Q5TEJ8 643 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 ARL6IP4Q66PJ3 421 aaKnown RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 KCTD16Q68DU8 428 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 PDXDC2PQ6P474 469 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 UNC13DQ70J99 1090 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 FASTKD5Q7L8L6 764 aaKnown RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 IRF2BP1Q8IU81 584 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 IGDCC4Q8TDY8 1250 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 DCAF4Q8WV16 495 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 CCDC42Q96M95 316 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 IFIH1Q9BYX4 1025 aaKnown RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 MIS12Q9H081 205 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 NAPBQ9H115 298 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 RNPEPL1Q9HAU8 725 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 EPB41L5Q9HCM4 733 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 LARSQ9P2J5 1176 aaKnown RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 A0A1W2PRG0 241 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 RCCD1A6NED2 376 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 TRIM75PA6NK02 468 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 TRAFD1O14545 582 aaPredicted RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 ZBTB43O43298 467 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 CALB2P22676 271 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 GNALP38405 381 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 MSH2P43246 934 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 MARSP56192 900 aaKnown RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 HUNKP57058 714 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 PABPC4Q13310 644 aaKnown RBP eCLIP5.66□□□□□ -1.5
USP28-213ENST00000544967 TAF11Q15544 211 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 UAP1Q16222 522 aaPredicted RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 CERKLQ49MI3 558 aaPredicted RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 MEI1Q5TIA1 1274 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 KLHDC7AQ5VTJ3 777 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 ANO7Q6IWH7 933 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 ZNF746Q6NUN9 644 aaPredicted RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 ZCCHC8Q6NZY4 707 aaKnown RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 C17orf99Q6UX52 265 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 CCDC84Q86UT8 332 aaPredicted RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 TRIM22Q8IYM9 498 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 CHCHD4Q8N4Q1 142 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 USP38Q8NB14 1042 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 SHCBP1Q8NEM2 672 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 USP6NLQ92738 828 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 YIPF3Q9GZM5 350 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 RXFP1Q9HBX9 757 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 TAB2Q9NYJ8 693 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 LRCH1Q9Y2L9 728 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.66□□□□□ -1.5
USP28-213ENST00000544967 WDR81Q562E7 1941 aa5.66□□□□□ -1.5
USP28-213ENST00000544967 CCDC169A6NNP5 214 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 IGF2BP3O00425 579 aaKnown RBP eCLIP5.65□□□□□ -1.5
USP28-213ENST00000544967 TNFRSF10BO14763 440 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 SNX3O60493 162 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 ALDH5A1P51649 535 aaPredicted RBP5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms