RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 PHOX2BQ99453 314 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 SEMA6BQ9H3T3 888 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 THAP9Q9H5L6 903 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 PCDHGC5Q9Y5F6 944 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 PCDHA2Q9Y5H9 948 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 ITIH6Q6UXX5 1313 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 ATXN2Q99700 1313 aaKnown RBP8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 TMEM221A6NGB7 291 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 EIF4E1BA6NMX2 242 aaKnown RBP8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 A6NNZ2 444 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 NFIBO00712 420 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 PSMA7O14818 248 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 HIP1RO75146 1068 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 PSMD10O75832 226 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 RNF8O76064 485 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 CCDC159P0C7I6 412 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 ALOX15P16050 662 aaPredicted RBP8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 CCNE1P24864 410 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 SLC8A1P32418 973 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 COPB1P53618 953 aaKnown RBP8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 INHBCP55103 352 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 BTG3Q14201 252 aaPredicted RBP8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 MYBPC3Q14896 1274 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 TUBB8Q3ZCM7 444 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 CFAP58Q5T655 872 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 ANKRD40Q6AI12 368 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 B3GNT9Q6UX72 402 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 DYMQ7RTS9 669 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 YTHDF3Q7Z739 585 aaKnown RBP8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 SAMD14Q8IZD0 417 aaPredicted RBP8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 CHCHD4Q8N4Q1 142 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 SLC5A5Q92911 643 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 CCDC51Q96ER9 411 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 RPGRIP1Q96KN7 1286 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 ATP6V0A4Q9HBG4 840 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 GGA3Q9NZ52 723 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 PPP1R9AQ9ULJ8 1098 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 KIAA1024Q9UPX6 916 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 REXO2Q9Y3B8 237 aaKnown RBP8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 OTOFQ9HC10 1997 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 POTEFA5A3E0 1075 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 EML1O00423 815 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 DNM1LO00429 736 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 POTEIP0CG38 1075 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 RPA1P27694 616 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 CXCR5P32302 372 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 GUCY2FP51841 1108 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 SPAG1Q07617 926 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 ARSHQ5FYA8 562 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 DCAF15Q66K64 600 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 CENPPQ6IPU0 288 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 POTEGQ6S5H5 508 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 POTEEQ6S8J3 1075 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 ZNF467Q7Z7K2 595 aaPredicted RBP8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 GLIS3Q8NEA6 775 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 NSMCE1Q8WV22 266 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 HOOK2Q96ED9 719 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 STAMBPL1Q96FJ0 436 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 C12orf42Q96LP6 360 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 FHDC1Q9C0D6 1143 aaPredicted RBP8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 YIPF3Q9GZM5 350 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 HAUS4Q9H6D7 363 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 SLC39A2Q9NP94 309 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 CCPG1Q9ULG6 757 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 PRELID1Q9Y255 219 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 PPP2R3BQ9Y5P8 575 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 DUSP10Q9Y6W6 482 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 LINC00854A0A1B0GVQ3 168 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 LSM1O15116 133 aaKnown RBP8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 NKRFO15226 690 aaKnown RBP eCLIP8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 PLA2G4BP0C869 781 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 PPP1R2P41236 205 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 GCLCP48506 637 aaPredicted RBP8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 BACE1P56817 501 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 PSMC6P62333 389 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 COASYQ13057 564 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 PLCB4Q15147 1175 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 SH3D19Q5HYK7 790 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 NOL9Q5SY16 702 aaKnown RBP8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 ALS2CLQ60I27 953 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 TLDC1Q6P9B6 456 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 MAATS1Q7Z4T9 603 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 SYCP3Q8IZU3 236 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 TMCO5AQ8N6Q1 288 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 REPS2Q8NFH8 660 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 ZNF507Q8TCN5 953 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 KLRG1Q96E93 195 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 CYFIP2Q96F07 1278 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 WNK4Q96J92 1243 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 ALS2CR12Q96Q35 445 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 WRNIP1Q96S55 665 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 FGFBP2Q9BYJ0 223 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 TUBGCP4Q9UGJ1 667 aa8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 COL11A1P12107 1806 aaPredicted RBP8.6□□□□□ -1.03
PDLIM5-221ENST00000542407 ESYT3A0FGR9 886 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 PDLIM1O00151 329 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 MEIS1O00470 390 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 YY1P25490 414 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 EEF1GP26641 437 aaKnown RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 CSE1LP55060 971 aaKnown RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 110.1 ms