RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 TMEM87AQ8NBN3 555 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 RSAD2Q8WXG1 361 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 FAM20AQ96MK3 541 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 MAN1C1Q9NR34 630 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 TPCN1Q9ULQ1 816 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 FAN1Q9Y2M0 1017 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 RIF1Q5UIP0 2472 aaKnown RBP17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 ARL5CA6NH57 179 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 PROB1E7EW31 1015 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 TEX28O15482 410 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 SOD2P04179 222 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 AK2P54819 239 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 DSC1Q08554 894 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 BMS1Q14692 1282 aaKnown RBP17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 XKR9Q5GH70 373 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 FLCNQ8NFG4 579 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 ST13P5Q8NFI4 369 aaPredicted RBP17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 RSPH1Q8WYR4 309 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 RABGGTAQ92696 567 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 TNFRSF25Q93038 417 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 JPH2Q9BR39 696 aaPredicted RBP17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 TMEM175Q9BSA9 504 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 HERC2P3Q9BVR0 1158 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 TM6SF1Q9BZW5 370 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 NXF3Q9H4D5 531 aaKnown RBP17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 KCNK12Q9HB15 430 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 PDRG1Q9NUG6 133 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 DOCK6Q96HP0 2047 aa17.26■□□□□ 0.35
CLSTN3-213ENST00000541953 STK36Q9NRP7 1315 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 CNTNAP2Q9UHC6 1331 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 PRR23AA6NEV1 266 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 INPPL1O15357 1258 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 B4GALT5O43286 388 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 LARGE1O95461 756 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 SPATA31D3P0C874 917 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 RFC5P40937 340 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 OR1G1P47890 313 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 PTENP60484 403 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 MBTD1Q05BQ5 628 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 CAPSQ13938 189 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 KIAA0319Q5VV43 1072 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 SPATA31D4Q6ZUB0 917 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 FRMD5Q7Z6J6 570 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 PPFIBP1Q86W92 1011 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 PLCD3Q8N3E9 789 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 GSTCDQ8NEC7 633 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 ZNF707Q96C28 371 aaPredicted RBP17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 SNX27Q96L92 541 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 RPS6KC1Q96S38 1066 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 APOL6Q9BWW8 343 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 EMILIN2Q9BXX0 1053 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 MRPL17Q9NRX2 175 aaKnown RBP17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 DUSP12Q9UNI6 340 aa17.25■□□□□ 0.35
CLSTN3-213ENST00000541953 SPDYE4A6NLX3 237 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 SLITRK3O94933 977 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 ALDH2P05091 517 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 ITGA4P13612 1032 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 FDPSP14324 419 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 NBL1P41271 181 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 TDGQ13569 410 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 FAM193BQ96PV7 902 aaPredicted RBP17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 MYADMQ96S97 322 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 MTRQ99707 1265 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 CXCL16Q9H2A7 254 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 MFSD1Q9H3U5 465 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 FAM186AA6NE01 2351 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 ZNF292O60281 2723 aa17.24■□□□□ 0.35
CLSTN3-213ENST00000541953 GVINP1Q7Z2Y8 2422 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 PTPRZ1P23471 2315 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 TBX3O15119 743 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 PFKFB2O60825 505 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 URODP06132 367 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 GCFC2P16383 781 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 ARF4P18085 180 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 AKAP5P24588 427 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 NUBP1P53384 320 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 C15orf39Q6ZRI6 1047 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 OTOP3Q7RTS5 596 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 GLYCTKQ8IVS8 523 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 TPH2Q8IWU9 490 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 FAM177A1Q8N128 213 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 EIF2AK1Q9BQI3 630 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 PAAF1Q9BRP4 392 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 GPR62Q9BZJ7 368 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 ZSWIM4Q9H7M6 989 aa17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 MTCL1Q9Y4B5 1905 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-213ENST00000541953 CCDC195A0A1B0GUA6 201 aa17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 KRBA1A5PL33 1030 aa17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 TTLL13PA6NNM8 815 aa17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 INO80B-WBP1J3KQ70 363 aa17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 ERLIN2O94905 339 aa17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 RPL17P18621 184 aaKnown RBP17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 AOC1P19801 751 aa17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 GLRA2P23416 452 aa17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 GLUD2P49448 558 aa17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 CLCN5P51795 746 aa17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 FOSBP53539 338 aa17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 CPLX2Q6PUV4 134 aaKnown RBP17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 IFNLR1Q8IU57 520 aaPredicted RBP17.22■□□□□ 0.35
CLSTN3-213ENST00000541953 SIX5Q8N196 739 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms